Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_M08
         (1132 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    30   3.5  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   8.0  

>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = +3

Query: 777  PRPXYXPXNXPXSNTPXXXXPGPGXXHXNXPXRXGXXPIWXPGPXPPXXXXP 932
            P P     N P  N P    P P     N P   G  P    GP  P    P
Sbjct: 1007 PSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPSPNGPSPNGPNGPSDPNKPGP 1058


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 20/82 (24%), Positives = 27/82 (32%)
 Frame = +3

Query: 702 PALXPTARXAXSAGXELXXRXXXXRPRPXYXPXNXPXSNTPXXXXPGPGXXHXNXPXRXG 881
           P+  PT +   S G           P+P   P +   + +P    P P     + P    
Sbjct: 445 PSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPS---PQPAEVSKSPPPPPP 501

Query: 882 XXPIWXPGPXPPXXXXPFPVLP 947
             PI  P   PP    P P  P
Sbjct: 502 LPPIATPSSVPPPPPPPPPPPP 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,127,742
Number of Sequences: 27780
Number of extensions: 151838
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3057296194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)