Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_M02
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   4.7  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.2  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 23  SLLWEFLKTFVGHSCLEQRNLSQFKMYSKXVVIRCTPCMRERSSFYASWXTQRSIRSPAN 202
           +L  EFLK   G  C++       K Y K V    T C+ + S   +S   + + R P +
Sbjct: 420 ALCGEFLKNAAGMQCIDCHYTCHKKCYPKVV----TKCISKSSDSASSEYEKINHRIPHH 475

Query: 203 FQGQSD 220
           F+  ++
Sbjct: 476 FESHTN 481


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 216 PTPSRYSRLCHLGQGKWGE 272
           P+P+   R  HL +GKW E
Sbjct: 308 PSPTSARRASHLSEGKWDE 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,713
Number of Sequences: 5004
Number of extensions: 61454
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)