Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_M01
         (980 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584...    29   7.5  

>07_03_1175 -
           24555965-24556117,24557809-24558264,24558270-24558436,
           24558468-24558756,24559620-24559726,24559841-24559909,
           24560001-24560109
          Length = 449

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 252 GQGKWGEXRSVVTXXXXDQGLLGKGGYXRXXFNDDRGXXTGXAYGTRVSGPGG 410
           G+   G    V T      G+ G GG+    +    G  +G  YGT   G GG
Sbjct: 94  GKDLQGRIVRVSTANDRAGGIRGGGGFGAGGYGSGGGYSSGGGYGTGEYGRGG 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,243
Number of Sequences: 37544
Number of extensions: 213948
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)