Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_L24
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.17 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    29   0.92 
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.8  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   4.9  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   6.5  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 284 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 177
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 401 LNSLKLEIHNYLQSCFKLNASLEFNDKVY 315
           L  L LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -2

Query: 386 LEIHNYLQSCFKLNASLEFNDKVYFPNDFACPMTAIAGPALINPSRTLRPTFSI 225
           L +H YL +C +  + +E    ++    +   +T+I  P +++PS+ +    S+
Sbjct: 130 LLLHLYLLNCHEQGSLIEEPRPLFLDPSWKEKVTSIMSPQMVDPSKMISSCLSL 183


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 682 NFLNIHSNKTYNVKLKDEL 626
           NF++ H NK Y + L DEL
Sbjct: 233 NFMDKHLNKPYEINLMDEL 251


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 724 IRYRYTQKKKNENLNFLNIHSNKTYNVKLKD 632
           I+Y + Q   + +L   NI  +K YNVKL D
Sbjct: 136 IQYLHRQGCVHRDLKLENIFLDKAYNVKLGD 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,204
Number of Sequences: 5004
Number of extensions: 52632
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)