Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_L23
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   124   1e-29
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    31   0.18 

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  124 bits (300), Expect = 1e-29
 Identities = 61/132 (46%), Positives = 80/132 (60%)
 Frame = +2

Query: 185 LLVXPDGVQRGLVGTIXERFEKKGFKLVGLKFVWPSEELLXQHYSDLASRPFFPGLXKYM 364
           + V PD VQRGL+G I  +FE KG+KL  LKF+ PS +L+ +HY++   +PF+  L  +M
Sbjct: 8   IAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFM 67

Query: 365 SSGPVVPMVWEGLNVVKTGRHIAXAQLTQLTXXPALSAVISAFXLGRNIIHGSDSVESAX 544
           +SGPV  M+WEG   VKTGR +  A    L   P          LGRN+ HGSDS+ESA 
Sbjct: 68  ASGPVCAMIWEGKQAVKTGRLMLGAS-NPLDSAPGTIRGDYGIDLGRNVCHGSDSIESAN 126

Query: 545 XXIGLWFTDXEV 580
             I LWF   E+
Sbjct: 127 REIKLWFQPSEI 138


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 258 KPFFSKRSKMVPTRPRCTPSGLTNNK*YA 172
           KPF +KRSK++P RP  T   L+ +  Y+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLSKSSDYS 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,486
Number of Sequences: 5004
Number of extensions: 38850
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)