Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_L19
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 170 2e-43
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 42 2e-04
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.6
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 26 6.3
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 6.3
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 6.3
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.3
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.3
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 170 bits (414), Expect = 2e-43
Identities = 75/127 (59%), Positives = 96/127 (75%)
Frame = +1
Query: 424 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 603
I+DVW+ NL +E +I ++++Y V+MDTEFPGVVARP+G F+S+ DY YQ LR NVD
Sbjct: 22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 81
Query: 604 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 783
L+IIQ+GL DE G P TWQFNF FNLQ+DMYA +SI+LL SG+ F+KH+E GI
Sbjct: 82 LKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAPESIELLTKSGIDFKKHQEVGI 141
Query: 784 EPLEFAE 804
EP +FAE
Sbjct: 142 EPADFAE 148
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 825 LXLIDNIKWLXFHSGYDFXLFIK 893
L L + + W+ FHSGYDF +K
Sbjct: 155 LVLQEEVTWITFHSGYDFAYLLK 177
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 41.5 bits (93), Expect = 2e-04
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Frame = +1
Query: 430 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 609
++ N E + + + V H+V++D EF G++ ++T +Y+LLR +
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61
Query: 610 IIQLGLTF--MDENGKT---PPGYTTWQF-NFKFNLQEDMYAQ-DSIDLLQNSGLQFRKH 768
I+Q+G+TF + NGK+ P + +L+ D ++ SI L G F K
Sbjct: 62 ILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNKQ 121
Query: 769 EEDGIEPLEFAE 804
+G+ L E
Sbjct: 122 LTEGVPYLSRIE 133
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 509 SIATQ*YFWTTCLIIWNSSCKL 444
S + + + W TCL IW +CKL
Sbjct: 550 STSARRFRWKTCLKIWKEACKL 571
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 628 TFMDENGKTPPGYTT-WQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIEPL 792
T + E+ P Y+ W + L + A +I LLQ +G +F KH+ + L
Sbjct: 336 TLVFESTPAYPDYSRYWSVVERHRLTQWYIAPTAIRLLQRAGNEFVKHDRSSLRVL 391
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 369 SCIVYPFPNEKNYLFFSTPW 310
SC+VY FPN+ + L F W
Sbjct: 58 SCLVYGFPNKVSALKFEWNW 77
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 282 VQNTQNKSKTTASKKTDNSSRLETDKRYKMPSA-SFGSISLPGGQ 413
++NT N ++T AS+ +N ++ E+D + S+ SLP Q
Sbjct: 1 MRNTHNPNETEASEDAENDTQSESDLSFDHGSSEKLNRASLPKTQ 45
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 558 RSKFSNWSCNYSWKFCIHSYPMILLDY 478
+ K S W +W CI SY ++L D+
Sbjct: 535 KEKRSGWYKPDTWHVCITSYQLVLQDH 561
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 439 NHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 537
+H+L +E +R + ++ + + D +F GVV R
Sbjct: 450 DHSLRDELISLRSLAEQKNTIEFDAKFLGVVER 482
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,966
Number of Sequences: 5004
Number of extensions: 69581
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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