Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_L16
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.68
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.90
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 29 1.2
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 28 1.6
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.1
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 26 6.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.4
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 8.4
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 8.4
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.68
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 580 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 479
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.90
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 224 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 367
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/90 (21%), Positives = 39/90 (43%)
Frame = +3
Query: 627 VLVMTVSSTGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVMTLDEDMAANEDREAL 806
+L+ STG S++ K H YL +Y + V + R+Y ++ + ++L
Sbjct: 268 ILLHLAKSTGASSSSVEKIHAYLSGQIYHTKVDESLKKRQYEGNISAASKRVKSSAVQSL 327
Query: 807 GHSGEVPVIPNFCMVHRPLLSVVVKGLPIN 896
+ + + + + PL+S+ IN
Sbjct: 328 VERMQPQLSSHDGLQNNPLISIFASQTAIN 357
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 819 LRCAPRLHGLRWRPYLHQVS 760
L A +LHG+RW Y H+VS
Sbjct: 182 LAFASKLHGMRWFMYTHKVS 201
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 191 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 307
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/81 (19%), Positives = 34/81 (41%)
Frame = -2
Query: 277 NLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQYVISSWCKCGVRSQRTHGEDEGKQSQSH 98
N+S FL +R + + DDT + ++R SS C+ + TH ++
Sbjct: 28 NISKTFLS-YRTLTALAIETSCDDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGG 86
Query: 97 LGAVVIFESKSTNTVKILRNS 35
+ ++ N K+++ +
Sbjct: 87 IHPTIVIHEHQKNLAKVIQRT 107
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 498 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSST 653
VTP P S S PP +T T S P +++ S T + T +ST
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 498 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSST 653
VTP P S S PP +T T S P +++ S T + T +ST
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST 406
Score = 26.2 bits (55), Expect = 6.4
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 489 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSI--TRKVLVMTVSSTGD 659
L++ TP T P S S W TT T S T+ST + T + SST
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 660 STADT 674
ST+ +
Sbjct: 658 STSSS 662
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 428 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 520
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 327 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 148
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 147 EASAHTARTKA 115
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,736,366
Number of Sequences: 5004
Number of extensions: 79622
Number of successful extensions: 299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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