Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_L14
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.7  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   4.6  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   6.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   8.1  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 401  EKNHPLLNKESLKSVDLQKSSKVTNIKKKVELRNSSFFLSRLKK 270
            EK   +L K+  + V      ++ NI+K++E+RN    LS L+K
Sbjct: 1605 EKRREILQKDVEEQVAQSHQKQLDNIRKELEMRN-KLKLSMLEK 1647


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 654 AHFFLKKENKTISLWSC*EK 595
           AHF L   +KTI LW   EK
Sbjct: 104 AHFLLSTNDKTIKLWKLYEK 123


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 217 RWKIFKKIVSGSL-LNSVYFFSRLKKNEEFLNSTFFLMFVTLELF*RSTDFNDSLFK 384
           RW  F++    +  +  VY  +     +EFLN  FF+ F   E+  +  +   ++FK
Sbjct: 209 RWARFEEECGNAANVRQVYLAAIDALGQEFLNERFFIAFAKFEIRQKEYERARTIFK 265


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -2

Query: 350 QKSSKVTNIKKKVELRNSSFFL--SRLKKYTEFNKEPLTIFLK 228
           Q S +  +++KK+E RNS++ L   R + +T   +E  +I+LK
Sbjct: 380 QISKEEIDLQKKIEKRNSTYDLIKYRSRVHTSLIEERNSIYLK 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,650
Number of Sequences: 5004
Number of extensions: 45387
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)