Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_L11
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 56 9e-09
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 30 0.52
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po... 27 3.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 4.9
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.5
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 8.5
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 8.5
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 8.5
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 55.6 bits (128), Expect = 9e-09
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Frame = +1
Query: 154 LNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELG 333
LN +S + KFYST+S + + E SK + LNRPK LNA+ + +
Sbjct: 33 LNASSTMSRAFIRNPKFYSTSSNDTVLYE---SKNGARIFTLNRPKVLNAINVDMIDSIL 89
Query: 334 KAVNDFDADSNIA-AIIITGNEKAFAAGADIKEMQNNTYSS---NTKQGFLREW---EDI 492
+ + +SN+A II+ GN ++F++G DIK + + F +E+ +
Sbjct: 90 PKLVSLE-ESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTL 148
Query: 493 SNCGKPIIAAVNGFAWG 543
+ KP++A +NG G
Sbjct: 149 ATYQKPVVALMNGITMG 165
Score = 32.7 bits (71), Expect = 0.074
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
Frame = +2
Query: 443 HTAATQNRVSFANGRTSPTVGNPSLPLLM-VSLGGGCELAMLCDIIYAGEKAKFGQPEIN 619
H A + R+S T T P + L+ +++GGG LAM A E F PE
Sbjct: 136 HAFAQEYRLS----HTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETG 191
Query: 620 IGTIPGAGGT---QRLPRYVGKSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETI 790
IG + RLP Y G + LT ++ + G+ + P
Sbjct: 192 IGYFTDVAASFFFSRLPGYFG----TYLGLTSQIVKGYDCLRTGIATHFVPKHMFPHLED 247
Query: 791 KLAE 802
+LAE
Sbjct: 248 RLAE 251
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 29.9 bits (64), Expect = 0.52
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 591 RRNSVNPRSTLAPSPEPEAPSVFPDTLASRK 683
RR+S + RS + EPE PS+ + +AS K
Sbjct: 10 RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40
>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 107
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 114 CRYCNSCFA-GKXCTEQVQSGIRNKPSIYKVL 206
C+ CNS GK C+ + + R PSI +VL
Sbjct: 59 CKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 585 AKRRNSVNPRSTLAPSPEPEAPSVFP 662
AK + V P AP EP PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 582 PAKRRNSVNPRSTLAPSPEPEAP 650
P K +N+++ + L PSPE +AP
Sbjct: 154 PGKEKNTLDLKHCLLPSPEYKAP 176
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 473 RKPCFVLLLYVLFCISLISAP 411
RKP F LLY ++ +L++ P
Sbjct: 228 RKPAFTSLLYAIYASALLATP 248
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 424 KEMQNNTYSSNTKQGFLRE-WEDISNCGKPIIAAVNG 531
K M+++ S N K F ++ WED+ +C K + NG
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNG 340
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = -1
Query: 546 PPPSETINSGNDGFPTVGDVLPFAKETLFCVAAVCIVLHLLNISTSRKSLLVT 388
PP N+ + P + +L K+ FC+ + C L ++ ++ ++ L+T
Sbjct: 141 PPDPSNPNATSSSPPPLTPILELIKQNNFCIPSPCRKLVWQSLVSAERNELLT 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,814,708
Number of Sequences: 5004
Number of extensions: 83090
Number of successful extensions: 242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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