Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_L05
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    30   0.52 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    29   1.2  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   6.4  
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom...    26   6.4  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   8.4  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 565 NGVYAKYTSLTE*KFIDDIVATTTSMHNVTGTNSLMTWRAPYFNSSSSIC 416
           +GVY  +    E  F  +++A +T+ HN+     LM     Y+ S S++C
Sbjct: 814 SGVYTAFCVQAEAAFGSNVLAASTARHNLEIDLRLMLEMKNYWGSISALC 863


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 492 LVVVATISSINFYSVKDVYLAYTPFHE-ESPYASTKVWNALANSMILLCVIALMTVLLIV 668
           L V  TIS ++  S   +Y  +TPF E    Y +T +  ++A S IL C   L  V L+ 
Sbjct: 236 LKVYKTISPLHTQSTDKLYTIWTPFSELHYFYCATPITFSIA-SKILSCCKKLKQVELVD 294

Query: 669 L 671
           L
Sbjct: 295 L 295


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 532 E*KFIDDIVATTTSMHNVTGTNSLMTWRAPYFNSSSSICGSTGAAG 395
           E   +D    T+T+  N T T S  +  +   ++SSS   ++GAAG
Sbjct: 499 ETSILDSTNTTSTNATNTTTTTSSSSTASSSASASSSTSATSGAAG 544


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 570 EESPYASTKVWNALANSMILLCVIALMTVL-LIVLYKKK 683
           EESPY  TK ++   N+ I L +  +   + LI +YK K
Sbjct: 4   EESPYQLTKTFSNPKNNKIGLAIFLIGAFINLIHIYKPK 42


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 575 ESIRINKSVECIGQFNDLVVCDCINDG-VTYC-ALQEKMLQDYSWMVDSIIINLAVSILI 748
           ++I +  +V C+    +LVVC C N   + Y    +++ L + S    S II L  +I+ 
Sbjct: 94  KTIELEATVNCLCVNENLVVCGCSNSSCIVYSWNAEQRNLTEISRFTCSEIIPLEFAIVK 153

Query: 749 L 751
           L
Sbjct: 154 L 154


>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 638 DCINDGVTYCALQEKMLQDYSWMVDSIIIN 727
           +C++DGV   A+  K  +D+   VD+ +++
Sbjct: 47  ECVSDGVRSAAVLMKYFEDHPPQVDAFLVS 76


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 328 LWQCRTD*RWPIRXLLLPSNLEFQQHQWNH 417
           L+Q  T  +W I  L L S LEF Q +W H
Sbjct: 328 LFQPMTFAKWSI-PLFLSSALEFAQQRWPH 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,098
Number of Sequences: 5004
Number of extensions: 66518
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)