Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_L05
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...   137   9e-33
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...   137   9e-33
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...   137   9e-33
AF021905-1|AAB84394.1|  358|Caenorhabditis elegans presenilin pr...    43   3e-04
AF000265-8|AAB52948.1|  358|Caenorhabditis elegans Homolog of pr...    43   3e-04
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    29   4.5  
AL132952-13|CAB61154.2|  283|Caenorhabditis elegans Hypothetical...    28   7.9  

>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score =  137 bits (332), Expect = 9e-33
 Identities = 69/152 (45%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
 Frame = +3

Query: 411 EPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINFYSVKDV-YLAYTPFHEESPYA 587
           E  +EE ELKYGA HVI LFVPV+LCM +VV T+++I FYS  +  +L YTPF  E+   
Sbjct: 35  ENVVEEAELKYGASHVIHLFVPVSLCMALVVFTMNTITFYSQNNGRHLLYTPFVRETDSI 94

Query: 588 STKVWNALANSMILLCVIALMTVLLIVLYKKKCYKTIHGWXXXXXXXXXXXXXXXXXEEA 767
             K   +L N++++LCV+ LMTVLLIV YK K YK IHGW                 +E 
Sbjct: 95  VEKGLMSLGNALVMLCVVVLMTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEV 154

Query: 768 LIAYNIPMDYITLXFVLWNFGVMGMIVIHWXG 863
           L ++++    + + F L N+GV+GM+ IHW G
Sbjct: 155 LKSFDVSPSALLVLFGLGNYGVLGMMCIHWKG 186


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score =  137 bits (332), Expect = 9e-33
 Identities = 69/152 (45%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
 Frame = +3

Query: 411 EPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINFYSVKDV-YLAYTPFHEESPYA 587
           E  +EE ELKYGA HVI LFVPV+LCM +VV T+++I FYS  +  +L YTPF  E+   
Sbjct: 35  ENVVEEAELKYGASHVIHLFVPVSLCMALVVFTMNTITFYSQNNGRHLLYTPFVRETDSI 94

Query: 588 STKVWNALANSMILLCVIALMTVLLIVLYKKKCYKTIHGWXXXXXXXXXXXXXXXXXEEA 767
             K   +L N++++LCV+ LMTVLLIV YK K YK IHGW                 +E 
Sbjct: 95  VEKGLMSLGNALVMLCVVVLMTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEV 154

Query: 768 LIAYNIPMDYITLXFVLWNFGVMGMIVIHWXG 863
           L ++++    + + F L N+GV+GM+ IHW G
Sbjct: 155 LKSFDVSPSALLVLFGLGNYGVLGMMCIHWKG 186


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score =  137 bits (332), Expect = 9e-33
 Identities = 69/152 (45%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
 Frame = +3

Query: 411 EPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINFYSVKDV-YLAYTPFHEESPYA 587
           E  +EE ELKYGA HVI LFVPV+LCM +VV T+++I FYS  +  +L YTPF  E+   
Sbjct: 35  ENVVEEAELKYGASHVIHLFVPVSLCMALVVFTMNTITFYSQNNGRHLLYTPFVRETDSI 94

Query: 588 STKVWNALANSMILLCVIALMTVLLIVLYKKKCYKTIHGWXXXXXXXXXXXXXXXXXEEA 767
             K   +L N++++LCV+ LMTVLLIV YK K YK IHGW                 +E 
Sbjct: 95  VEKGLMSLGNALVMLCVVVLMTVLLIVFYKYKFYKLIHGWLIVSSFLLLFLFTTIYVQEV 154

Query: 768 LIAYNIPMDYITLXFVLWNFGVMGMIVIHWXG 863
           L ++++    + + F L N+GV+GM+ IHW G
Sbjct: 155 LKSFDVSPSALLVLFGLGNYGVLGMMCIHWKG 186


>AF021905-1|AAB84394.1|  358|Caenorhabditis elegans presenilin
           protein.
          Length = 358

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 30/139 (21%), Positives = 53/139 (38%)
 Frame = +3

Query: 441 YGARHVIKLFVPVTLCMLVVVATISSINFYSVKDVYLAYTPFHEESPYASTKVWNALANS 620
           Y  + +  +  PV +CML V   +        +   + Y  FH      S  +      +
Sbjct: 8   YSGKTITGVLYPVAICMLFVAINVKLSQPEQQEQSKVVYGLFHSYDTADSGTI------T 61

Query: 621 MILLCVIALMTVLLIVLYKKKCYKTIHGWXXXXXXXXXXXXXXXXXEEALIAYNIPMDYI 800
           + L+  + L T L +  Y+ K YK I  +                 +    A +IP+   
Sbjct: 62  LYLIGFLILTTSLGVFCYQMKFYKAIKVYVLANSIGILLVYSVFHFQRIAEAQSIPVSVP 121

Query: 801 TLXFVLWNFGVMGMIVIHW 857
           T  F++  FG +G+  +HW
Sbjct: 122 TFFFLILQFGGLGITCLHW 140


>AF000265-8|AAB52948.1|  358|Caenorhabditis elegans Homolog of
           presenilin protein 1 protein.
          Length = 358

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 30/139 (21%), Positives = 53/139 (38%)
 Frame = +3

Query: 441 YGARHVIKLFVPVTLCMLVVVATISSINFYSVKDVYLAYTPFHEESPYASTKVWNALANS 620
           Y  + +  +  PV +CML V   +        +   + Y  FH      S  +      +
Sbjct: 8   YSGKTITGVLYPVAICMLFVAINVKLSQPEQQEQSKVVYGLFHSYDTADSGTI------T 61

Query: 621 MILLCVIALMTVLLIVLYKKKCYKTIHGWXXXXXXXXXXXXXXXXXEEALIAYNIPMDYI 800
           + L+  + L T L +  Y+ K YK I  +                 +    A +IP+   
Sbjct: 62  LYLIGFLILTTSLGVFCYQMKFYKAIKVYVLANSIGILLVYSVFHFQRIAEAQSIPVSVP 121

Query: 801 TLXFVLWNFGVMGMIVIHW 857
           T  F++  FG +G+  +HW
Sbjct: 122 TFFFLILQFGGLGITCLHW 140


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 502 TTTSMHNVTGTNSLMTWRAPYFNSSSSI 419
           TTT   + T T S +TW+  +FN +S++
Sbjct: 370 TTTPAPSSTSTKSSITWKVAHFNGNSNV 397


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +3

Query: 549 LAYTPFHEESPYASTKVWN---ALANSMILLCVIALMTVLLIVL 671
           L +TP  EESP  S   W+   + A    +  +I+++TVL++V+
Sbjct: 29  LGFTPITEESPNCSFYEWSRNPSHAQFFRIFSIISVLTVLVVVV 72


>AL132952-13|CAB61154.2|  283|Caenorhabditis elegans Hypothetical
           protein Y51H4A.22 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +3

Query: 360 HQGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINF---Y 530
           HQG S A    V  A ++P  E L+    A+ +  LF P     + V     S N+    
Sbjct: 194 HQGGSCADHGVVGYAMLDPATEPLKAASSAKGLFYLFTPSYFKYIGVPLNKLSTNWLWAL 253

Query: 531 SVKDVYLAYTPFHEESPYASTK 596
             KD+ +     +EE+P   T+
Sbjct: 254 DPKDLKVEICHQNEEAPVEYTR 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,934,465
Number of Sequences: 27780
Number of extensions: 380045
Number of successful extensions: 1022
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)