Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_L01
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.38 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.87 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.7  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   6.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 619 PPPPXGXGGXFXGPPXPPP 675
           PPPP G  G    PP PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 452 GGGPXPPXXFXXGGXXPPPPXGGPP 378
           GG P PP      G  PPPP   PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 620 PPPPXGXGXFFXAPPXPPP 676
           PPPP   G     PP PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 384 APXXGGGGXPPXXKXXXGXGAPPP 455
           AP  GG   PP      G G PPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 619 PPPPXGXGGXFXGPPXPPP 675
           PPPP   G     PP PPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 23.8 bits (49), Expect(2) = 1.2
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -1

Query: 466 PXXXGGGAPXPXXXFXXGGXPPPPXXGAPP 377
           P    GG P P       G  PPP    PP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 23.0 bits (47), Expect(2) = 1.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 604 KKPPPPPP 581
           K PPPPPP
Sbjct: 730 KSPPPPPP 737


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 466 PXXXGGGAPXPXXXFXXGGXPPPPXXGAP 380
           P   G  AP P   F   G P PP  GAP
Sbjct: 484 PFIPGTSAPLPPTTFAPPGVPLPPIPGAP 512


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -3

Query: 674 GGGXGGPXKXPPXPXGGGGF 615
           GGG GGP   PP P G GGF
Sbjct: 194 GGGSGGP---PPGPGGFGGF 210


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 619 PPPPXGXGGXFXGPPXPPP 675
           PPPP G       PP PPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -2

Query: 693 GXGXFXGGGXGGAXKXXPXPXGGGGVXFXXKNPP 592
           G G F G G GGA        G GG  F   + P
Sbjct: 88  GFGGFPGAGPGGARTFHFNMGGPGGAQFFSASDP 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.151    0.509 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,400
Number of Sequences: 5004
Number of extensions: 24018
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)