Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_K22
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.02c |sss1||translocon gamma subunit Sss1|Schizosaccharom...    56   9e-09
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.52 
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   8.5  

>SPAC4G8.02c |sss1||translocon gamma subunit
           Sss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 70

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 25/56 (44%), Positives = 32/56 (57%)
 Frame = +3

Query: 186 KQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIPINNIIVG 353
           K F K+    ++RC KPDRKEF  I+ A A            +KLIHIPIN ++VG
Sbjct: 13  KNFYKEGSHFIKRCVKPDRKEFLSISKAVATGFVLMGLIGYIIKLIHIPINKVLVG 68


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 864 PXGXGGFFXXXXPPHPPPPXXXKKKKXK 781
           P    GF     PP PPPP   KK+K K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 886 PKKKXPXXXGXGGFFFXXKXPPPPPPXXXKKKK 788
           P    P      GF    + PPPPPP   KK+K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 194 ELLARLDEFCDLIHY*INNSTIVLLLIHVDNYLIALVPNSKNVQLQVVKIL 42
           ++L++L  F    HY   N  + ++L+H+ NY +A     K VQ+  +K L
Sbjct: 447 DILSKL--FSAAKHYNSLNGLLAMILVHMANYKLA---RRKLVQIGALKFL 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,125
Number of Sequences: 5004
Number of extensions: 35771
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)