Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_K19
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296...    29   3.5  
02_01_0051 - 385738-385968,386439-386864                               29   6.2  
04_03_0642 + 18289461-18290897,18291586-18291666                       28   8.2  

>03_02_0990 -
           13028011-13028114,13028182-13028554,13029488-13029631,
           13030389-13030396,13030634-13030711,13030968-13031132,
           13031414-13031471
          Length = 309

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 239 NLSDKXSSTWLIPRRRSLKKPFTPALTGPAXFNIKTAQHKIKTEHXMVEI-YKLPCT 72
           N+ D    TWL+P    L  P++   T PA  +         + H  +E+ Y  PCT
Sbjct: 124 NVKDYKGRTWLLPLAAYLYNPWSTQQTKPAVRSDFNNYPPHSSNHHWMEVSYLEPCT 180


>02_01_0051 - 385738-385968,386439-386864
          Length = 218

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 296 RFIQLKVYRLVQCNVA*WNLLPSPLSC 376
           RF Q+KVY+    NV   NLLP+P  C
Sbjct: 155 RFAQIKVYQTGPFNVEAANLLPTPGIC 181


>04_03_0642 + 18289461-18290897,18291586-18291666
          Length = 505

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 81  QLVNFNHXVFGFYFVLCRFNIEXRWSGQCWSKRFLQ 188
           +L    H VF  +F LC F     WS  C ++  L+
Sbjct: 296 ELKGLQHGVFWNFFKLCAFGSVQSWSNSCRNRPELE 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,856
Number of Sequences: 37544
Number of extensions: 234318
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)