Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_K19
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    32   0.45 
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    32   0.45 
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    32   0.45 
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    32   0.45 
Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    29   5.5  
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    29   5.5  
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    29   5.5  

>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -1

Query: 482 LHLPSAVLLKPVAQPPTKFSLPSFSVVVLPADVGVGTIVGWVTNSTTPRCTEPDDTLS 309
           LH PSA  ++P  Q       PSF V+ + + +  G  V +   STT   T+P  T+S
Sbjct: 392 LHAPSATSVQPTEQVVINNVTPSFPVLEI-SKLPTGAPVTFTATSTTLMVTQPTVTVS 448


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -1

Query: 482 LHLPSAVLLKPVAQPPTKFSLPSFSVVVLPADVGVGTIVGWVTNSTTPRCTEPDDTLS 309
           LH PSA  ++P  Q       PSF V+ + + +  G  V +   STT   T+P  T+S
Sbjct: 392 LHAPSATSVQPTEQVVINNVTPSFPVLEI-SKLPTGAPVTFTATSTTLMVTQPTVTVS 448


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -1

Query: 482 LHLPSAVLLKPVAQPPTKFSLPSFSVVVLPADVGVGTIVGWVTNSTTPRCTEPDDTLS 309
           LH PSA  ++P  Q       PSF V+ + + +  G  V +   STT   T+P  T+S
Sbjct: 392 LHAPSATSVQPTEQVVINNVTPSFPVLEI-SKLPTGAPVTFTATSTTLMVTQPTVTVS 448


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -1

Query: 482 LHLPSAVLLKPVAQPPTKFSLPSFSVVVLPADVGVGTIVGWVTNSTTPRCTEPDDTLS 309
           LH PSA  ++P  Q       PSF V+ + + +  G  V +   STT   T+P  T+S
Sbjct: 392 LHAPSATSVQPTEQVVINNVTPSFPVLEI-SKLPTGAPVTFTATSTTLMVTQPTVTVS 448


>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 549 HR-NEIKRNYKTKNLTAWVSKGRFTSAISSSLKAC 448
           HR N+IK N+K+  LT W+  G+      S    C
Sbjct: 96  HRQNKIKENHKSSVLTTWLENGKLIQTYQSGDVIC 130


>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
            protein 3, isoforma protein.
          Length = 1175

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 111  GFYFVLCRFNIEXRWSGQCWSKRFLQ*SPTR 203
            G+ F LC  +    W GQC + RF +  P R
Sbjct: 946  GYPFTLCLVDPNYEWCGQCPALRFCRGCPIR 976


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
            protein 3, isoformb protein.
          Length = 1178

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 111  GFYFVLCRFNIEXRWSGQCWSKRFLQ*SPTR 203
            G+ F LC  +    W GQC + RF +  P R
Sbjct: 949  GYPFTLCLVDPNYEWCGQCPALRFCRGCPIR 979


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
            c-terminal hydrolase protein.
          Length = 1175

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 111  GFYFVLCRFNIEXRWSGQCWSKRFLQ*SPTR 203
            G+ F LC  +    W GQC + RF +  P R
Sbjct: 946  GYPFTLCLVDPNYEWCGQCPALRFCRGCPIR 976


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,793
Number of Sequences: 27780
Number of extensions: 214439
Number of successful extensions: 582
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)