Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_K16
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    31   0.29 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    30   0.51 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.7  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    27   4.7  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   4.7  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   6.3  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   6.3  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +3

Query: 204 ALIASSVMALYRVPLHR---MKTARTHFHEVGTELELLRL--KYDVTGPSPEPLSNYLDA 368
           AL AS   A   VP  R   +    + +  V  +LE  ++  K D +G     L  Y DA
Sbjct: 15  ALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPVLDLE-YTDA 73

Query: 369 Q-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 461
             Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 74  GGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -2

Query: 742 GVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVGRRTLSPPTVTSSVERKPERLPEP 563
           G+TWST      +    +NL+A+K    S   SAN G     PP   S+   K    P P
Sbjct: 268 GLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSNDFWKDSNEPAP 327


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = -2

Query: 775  RVPEPPCCRTPGVTWSTAIVLKAIPRIP--SNLAATKASPGSDTASANVGRRTLSPPTVT 602
            R P P     P  T + A V      I   + ++A+K +P + T++A+       P    
Sbjct: 1025 RPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPV 1084

Query: 601  SSVERKPERLPEP 563
            ++   KP  +P P
Sbjct: 1085 ANNVSKPSAVPPP 1097


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 667 SPGSDTASANVGRRTLSPPTVTSSVER---KPERLPEPYCIANWVPFATY 527
           SP SDT S N+    LSP +   S  R   +P R  +   ++N +  A +
Sbjct: 143 SPASDTHSQNIHDEALSPSSFRVSRSRYFPRPHRSSKNLSVSNRLQLAVF 192


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 464 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 360
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 177 MGKISLFFLALIASSVMALYRVPLHRMKTARTH 275
           MGK+S+ + A IAS+ + ++  P +R      H
Sbjct: 1   MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 745  PGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVGRRTLSPPTVTSSVERK 584
            P +     I    + R PSN  +    P + +ASAN G   + P  + + VER+
Sbjct: 852  PSIIQEYNICFTTVDRSPSNSDSDDQIPDTPSASANQG---IFPRLIANLVERR 902


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,654
Number of Sequences: 5004
Number of extensions: 67749
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)