Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_K16
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50755-2|CAA90633.1| 444|Caenorhabditis elegans Hypothetical pr... 187 1e-47
AF077544-5|AAK39240.1| 398|Caenorhabditis elegans Aspartyl prot... 157 1e-38
U41746-2|AAO25989.1| 635|Caenorhabditis elegans Aspartyl protea... 81 4e-28
U41746-3|AAO25990.1| 429|Caenorhabditis elegans Aspartyl protea... 81 2e-27
U34889-1|AAB06576.1| 388|Caenorhabditis elegans aspartic protea... 116 2e-26
U97000-5|AAC47991.1| 393|Caenorhabditis elegans Aspartyl protea... 112 3e-25
U97000-4|AAC47994.1| 395|Caenorhabditis elegans Hypothetical pr... 111 9e-25
Z82092-3|CAB05013.1| 638|Caenorhabditis elegans Hypothetical pr... 110 1e-24
U97000-3|AAC47996.1| 389|Caenorhabditis elegans Aspartyl protea... 110 1e-24
AL021471-3|CAA16297.1| 638|Caenorhabditis elegans Hypothetical ... 110 1e-24
AL132948-17|CAC51056.1| 396|Caenorhabditis elegans Hypothetical... 109 3e-24
AF210248-1|AAF19445.1| 396|Caenorhabditis elegans aspartic prot... 109 3e-24
AF208526-1|AAF19442.1| 396|Caenorhabditis elegans aspartic prot... 109 3e-24
AL132948-20|CAD31821.1| 391|Caenorhabditis elegans Hypothetical... 107 1e-23
AL132948-19|CAD31820.1| 395|Caenorhabditis elegans Hypothetical... 105 3e-23
AJ009861-1|CAA08899.1| 395|Caenorhabditis elegans aspartic prot... 105 6e-23
AL132948-18|CAD31819.1| 390|Caenorhabditis elegans Hypothetical... 96 3e-20
AF045640-8|AAC02571.1| 394|Caenorhabditis elegans Hypothetical ... 91 1e-18
U64851-4|AAC47989.1| 389|Caenorhabditis elegans Hypothetical pr... 90 2e-18
Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical pr... 52 2e-16
AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical ... 80 2e-15
AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical ... 70 2e-12
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical p... 29 4.5
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 29 4.5
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 29 4.5
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 29 4.5
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 4.5
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 29 4.5
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 29 4.5
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z48178-4|CAA88202.1| 521|Caenorhabditis elegans Hypothetical pr... 28 7.8
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 7.8
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z50755-2|CAA90633.1| 444|Caenorhabditis elegans Hypothetical
protein R12H7.2 protein.
Length = 444
Score = 187 bits (455), Expect = 1e-47
Identities = 86/141 (60%), Positives = 106/141 (75%)
Frame = +3
Query: 321 DVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHN 500
+V G E L NY+DAQY+G ISIGTP Q+F V+FDTGSSNLW+PSKKC + +IAC+LH+
Sbjct: 77 NVEGEIDELLRNYMDAQYFGTISIGTPAQNFTVIFDTGSSNLWIPSKKCPFYDIACMLHH 136
Query: 501 KYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVA 680
+YDS+ S TY +G + AIQYG+GS+ GF+S D V V G+ FAEA SEPG+ FVA
Sbjct: 137 RYDSKSSSTYKEDGRKMAIQYGTGSMKGFISKDSVCVAGVCAEDQPFAEATSEPGITFVA 196
Query: 681 AKFDGILGMAFSTIAVDHVTP 743
AKFDGILGMA+ IAV V P
Sbjct: 197 AKFDGILGMAYPEIAVLGVQP 217
>AF077544-5|AAK39240.1| 398|Caenorhabditis elegans Aspartyl
protease protein 3 protein.
Length = 398
Score = 157 bits (381), Expect = 1e-38
Identities = 85/198 (42%), Positives = 120/198 (60%), Gaps = 10/198 (5%)
Frame = +3
Query: 192 LFFLALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSP------EPLS 353
+F L + + A+ R+ L + R + + G+ E L+ KY V G P E LS
Sbjct: 5 VFLLLALVALASAIQRIKLEKRTYTREQY-KFGSIQEHLKAKY-VPGYIPNKDAFNEGLS 62
Query: 354 NYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSKTYV 533
+Y +AQYYG ++IGTPPQ+F+V+FDTGSSNLWVP C + +IAC +HN++D +KS +
Sbjct: 63 DYSNAQYYGPVTIGTPPQNFQVLFDTGSSNLWVPCANCPFGDIACRMHNRFDCKKSSSCT 122
Query: 534 ANGTQFAIQYGSGSLSGFLSTDDVTVGG----LKVRRPTFAEAVSEPGLAFVAAKFDGIL 701
A G F IQYG+GS+ G + D V G + A A SEPG+ FVAAKFDGI
Sbjct: 123 ATGASFEIQYGTGSMKGTVDNDVVCFGHDTTYCTDKNQGLACATSEPGITFVAAKFDGIF 182
Query: 702 GMAFSTIAVDHVTPGVRQ 755
GM + TI+V+ ++ + Q
Sbjct: 183 GMGWDTISVNKISQPMDQ 200
>U41746-2|AAO25989.1| 635|Caenorhabditis elegans Aspartyl protease
protein 2, isoforma protein.
Length = 635
Score = 80.6 bits (190), Expect(2) = 4e-28
Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Frame = +3
Query: 468 HYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGG-----LKVRR 632
+YT+ +C NK+D+ KS +Y NG F I+YG+GS GFL D +T GG L V
Sbjct: 344 NYTD-SCFYQNKFDASKSSSYKTNGRNFIIEYGTGSARGFLGQDTITFGGIGEPQLAVPN 402
Query: 633 PTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTP 743
F +A S F DGILG+AF +IAVD +TP
Sbjct: 403 TVFGQATSLAAF-FEGQPLDGILGLAFKSIAVDQITP 438
Score = 62.5 bits (145), Expect(2) = 4e-28
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Frame = +3
Query: 165 LKTTMGKISLFFL-ALIASSVMALYRVPLHRMKTARTHFHEVGT------ELELLRLKYD 323
+K G +LF L AL+A+++ A+ +VPL +++ R G + E+ R +
Sbjct: 201 IKIISGMQNLFLLLALVAAALAAVVQVPLVKIEPYRNRLIREGRWVQYRKDREIRRFMMN 260
Query: 324 VTGPSP---EPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKC 467
+ +++Y D Y G I+IGTP Q FKV+ DTGSSNLW+P C
Sbjct: 261 KQSNDMSVGQYVNDYEDEAYVGNITIGTPQQQFKVILDTGSSNLWIPDITC 311
Score = 33.5 bits (73), Expect = 0.21
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +3
Query: 507 DSRKSKTYVANGTQF--AIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVA 680
D +S Y A + A YGS S SG L D V+ GG+ + ++ + + A
Sbjct: 21 DQLRSDAYAAGVDDYEHAGYYGSDSASGILGFDTVSFGGI-----SESQLIVPDTVVATA 75
Query: 681 AKFDGILGMAFSTIAVDHVTP 743
DGI+G+ F + ++ P
Sbjct: 76 EDIDGIMGLGFLANSQQNIYP 96
>U41746-3|AAO25990.1| 429|Caenorhabditis elegans Aspartyl protease
protein 2, isoformb protein.
Length = 429
Score = 80.6 bits (190), Expect(2) = 2e-27
Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Frame = +3
Query: 468 HYTNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGG-----LKVRR 632
+YT+ +C NK+D+ KS +Y NG F I+YG+GS GFL D +T GG L V
Sbjct: 138 NYTD-SCFYQNKFDASKSSSYKTNGRNFIIEYGTGSARGFLGQDTITFGGIGEPQLAVPN 196
Query: 633 PTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTP 743
F +A S F DGILG+AF +IAVD +TP
Sbjct: 197 TVFGQATSLAAF-FEGQPLDGILGLAFKSIAVDQITP 232
Score = 60.1 bits (139), Expect(2) = 2e-27
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Frame = +3
Query: 201 LALIASSVMALYRVPLHRMKTARTHFHEVGT------ELELLRLKYDVTGPSP---EPLS 353
LAL+A+++ A+ +VPL +++ R G + E+ R + + ++
Sbjct: 8 LALVAAALAAVVQVPLVKIEPYRNRLIREGRWVQYRKDREIRRFMMNKQSNDMSVGQYVN 67
Query: 354 NYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKC 467
+Y D Y G I+IGTP Q FKV+ DTGSSNLW+P C
Sbjct: 68 DYEDEAYVGNITIGTPQQQFKVILDTGSSNLWIPDITC 105
>U34889-1|AAB06576.1| 388|Caenorhabditis elegans aspartic protease
protein.
Length = 388
Score = 116 bits (280), Expect = 2e-26
Identities = 73/190 (38%), Positives = 99/190 (52%), Gaps = 9/190 (4%)
Frame = +3
Query: 201 LALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSP----EPLSNYLDA 368
LAL+A+ A+ +VP H+ ++ R + G L ++ +P +Y D
Sbjct: 7 LALVAACSAAVIQVPTHKTESLRAKLIKEGKYTAFLASQHAARAQQLNTGFQPFVDYFDD 66
Query: 369 QYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSKTYVANGTQ 548
Y G I++GTPPQ VV DTGSSNLWVP C + +C +Y S KS T+ ANG
Sbjct: 67 FYLGNITLGTPPQPATVVLDTGSSNLWVPGPSC---DGSCKGKREYQSTKSSTFKANGKP 123
Query: 549 FAIQYGSGSLSGFLSTDDVTVGG-----LKVRRPTFAEAVSEPGLAFVAAKFDGILGMAF 713
+ IQYGSG+ G+L D V G L V TF A + F GILG+AF
Sbjct: 124 WQIQYGSGNAKGYLGEDTVAFGAVTEKQLPVPSTTFGIA-THISSDFKNDAAGGILGLAF 182
Query: 714 STIAVDHVTP 743
+++AVDHV P
Sbjct: 183 TSLAVDHVVP 192
>U97000-5|AAC47991.1| 393|Caenorhabditis elegans Aspartyl protease
protein 5 protein.
Length = 393
Score = 112 bits (270), Expect = 3e-25
Identities = 63/141 (44%), Positives = 84/141 (59%), Gaps = 5/141 (3%)
Frame = +3
Query: 336 SPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNKYDSR 515
+P+ ++++ D +Y G I+IGTPPQ F VV DTGSSNLWVP C + +C +Y S
Sbjct: 61 APQNVNDFGDFEYLGNITIGTPPQPFLVVLDTGSSNLWVPGPSC---DGSCKGKREYQST 117
Query: 516 KSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGG-----LKVRRPTFAEAVSEPGLAFVA 680
KS T+ ANG + IQYGSG+ G+L D V G L V TF A + F
Sbjct: 118 KSSTFKANGKPWQIQYGSGNAKGYLGEDTVAFGAVTEKQLPVPSTTFGIA-THISSDFKN 176
Query: 681 AKFDGILGMAFSTIAVDHVTP 743
+GILG+AF+++AVDHV P
Sbjct: 177 DAAEGILGLAFTSLAVDHVVP 197
>U97000-4|AAC47994.1| 395|Caenorhabditis elegans Hypothetical
protein F21F8.4 protein.
Length = 395
Score = 111 bits (266), Expect = 9e-25
Identities = 64/145 (44%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Frame = +3
Query: 324 VTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNK 503
V +P+ ++++ D +Y G I+IGTPPQ F VV DTGS+NLWVP C T C ++
Sbjct: 57 VFASAPQNVNDFGDVEYLGNITIGTPPQQFIVVLDTGSANLWVPGSNCDGT---CKGKSE 113
Query: 504 YDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGG-----LKVRRPTFAEAVSEPGL 668
+DS KS T+ NG + IQY SGS G + D V GG L V TF A S
Sbjct: 114 FDSSKSTTFKKNGQSWQIQYESGSAKGIMGVDTVAFGGASEQQLLVPSTTFGIA-SHISS 172
Query: 669 AFVAAKFDGILGMAFSTIAVDHVTP 743
F +GILG+AF+++AVD VTP
Sbjct: 173 NFKNDAAEGILGLAFTSLAVDGVTP 197
>Z82092-3|CAB05013.1| 638|Caenorhabditis elegans Hypothetical
protein ZK384.3 protein.
Length = 638
Score = 110 bits (265), Expect = 1e-24
Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 4/185 (2%)
Frame = +3
Query: 201 LALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNYLDAQYYG 380
L L+ + A+++VP + R G L + +PL + D G
Sbjct: 5 LLLVTTCSAAVFQVPTTTSGSFRAKLIREGKYSSFLASRLQQLNTGSQPLLGFSDDPCIG 64
Query: 381 VISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTN----IACLLHNKYDSRKSKTYVANGTQ 548
I+IG+PPQS V DT S+NLWV C N + ++ +K+++ KS ++V + +
Sbjct: 65 NITIGSPPQSAFVFMDTTSANLWVMGSACTSVNCNDPLLGIIKHKFNTTKSTSFVKSNRK 124
Query: 549 FAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGMAFSTIAV 728
F IQYGSG SG+L TD V +GGLK+++ F A + F DGI G+A+ ++V
Sbjct: 125 FNIQYGSGECSGYLGTDTVEIGGLKIQKQEFGVA-NIVDYDFGTRPIDGIFGLAWPALSV 183
Query: 729 DHVTP 743
D VTP
Sbjct: 184 DQVTP 188
Score = 79.8 bits (188), Expect = 2e-15
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Frame = +3
Query: 363 DAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTN---IACLLHNKYDSRKSKTYV 533
D G I+IGTPPQS V DT S+N WV KC N + + +K+++ KS ++V
Sbjct: 451 DDSCIGNITIGTPPQSASVFMDTTSANWWVIGSKCTSANCNGYSGIRKHKFNTTKSTSFV 510
Query: 534 ANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGMAF 713
F+ +Y G +G+L TD V +GGL + + A + GL F + GI +A+
Sbjct: 511 EGNRTFSTEY--GLCTGYLGTDTVQMGGLTITKQELGIA-TIVGLGFGLKPYVGIFELAW 567
Query: 714 STIAVDHVTPGVRQ 755
++VD VTP +++
Sbjct: 568 PALSVDQVTPPMQK 581
>U97000-3|AAC47996.1| 389|Caenorhabditis elegans Aspartyl protease
protein 6 protein.
Length = 389
Score = 110 bits (265), Expect = 1e-24
Identities = 64/140 (45%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Frame = +3
Query: 339 PEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNKYDSRK 518
P+ ++++ D +Y G I+IGTP Q F VV DTGSSNLW+P C TN C +K+DS
Sbjct: 60 PQNVNDFGDFEYLGNITIGTPDQGFIVVLDTGSSNLWIPGPTCK-TN--CKTKSKFDSTA 116
Query: 519 SKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGG-----LKVRRPTFAEAVSEPGLAFVAA 683
S T+V NG + IQYGSG +G L D V G L V TF A S+ F
Sbjct: 117 SSTFVKNGKSWTIQYGSGDAAGILGQDTVRFGAKGDSQLSVPTTTFGIA-SKISADFKND 175
Query: 684 KFDGILGMAFSTIAVDHVTP 743
DGILG+AF+++AVD V P
Sbjct: 176 ATDGILGLAFTSLAVDGVVP 195
>AL021471-3|CAA16297.1| 638|Caenorhabditis elegans Hypothetical
protein ZK384.3 protein.
Length = 638
Score = 110 bits (265), Expect = 1e-24
Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 4/185 (2%)
Frame = +3
Query: 201 LALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNYLDAQYYG 380
L L+ + A+++VP + R G L + +PL + D G
Sbjct: 5 LLLVTTCSAAVFQVPTTTSGSFRAKLIREGKYSSFLASRLQQLNTGSQPLLGFSDDPCIG 64
Query: 381 VISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTN----IACLLHNKYDSRKSKTYVANGTQ 548
I+IG+PPQS V DT S+NLWV C N + ++ +K+++ KS ++V + +
Sbjct: 65 NITIGSPPQSAFVFMDTTSANLWVMGSACTSVNCNDPLLGIIKHKFNTTKSTSFVKSNRK 124
Query: 549 FAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGMAFSTIAV 728
F IQYGSG SG+L TD V +GGLK+++ F A + F DGI G+A+ ++V
Sbjct: 125 FNIQYGSGECSGYLGTDTVEIGGLKIQKQEFGVA-NIVDYDFGTRPIDGIFGLAWPALSV 183
Query: 729 DHVTP 743
D VTP
Sbjct: 184 DQVTP 188
Score = 79.8 bits (188), Expect = 2e-15
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Frame = +3
Query: 363 DAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTN---IACLLHNKYDSRKSKTYV 533
D G I+IGTPPQS V DT S+N WV KC N + + +K+++ KS ++V
Sbjct: 451 DDSCIGNITIGTPPQSASVFMDTTSANWWVIGSKCTSANCNGYSGIRKHKFNTTKSTSFV 510
Query: 534 ANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGMAF 713
F+ +Y G +G+L TD V +GGL + + A + GL F + GI +A+
Sbjct: 511 EGNRTFSTEY--GLCTGYLGTDTVQMGGLTITKQELGIA-TIVGLGFGLKPYVGIFELAW 567
Query: 714 STIAVDHVTPGVRQ 755
++VD VTP +++
Sbjct: 568 PALSVDQVTPPMQK 581
>AL132948-17|CAC51056.1| 396|Caenorhabditis elegans Hypothetical
protein Y39B6A.20 protein.
Length = 396
Score = 109 bits (262), Expect = 3e-24
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 9/190 (4%)
Frame = +3
Query: 201 LALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSP----EPLSNYLDA 368
LAL+A+ A+ +VP H+ ++ R + G L ++ +P +Y D
Sbjct: 7 LALVAACSAAVIQVPTHKTESLRAKLIKEGKYTAFLASQHAARAQQLNTGFQPFVDYFDD 66
Query: 369 QYYGVISIGTPPQSFKVVFDTGSSNLWV-----PSKKCHYTNIACLLHNKYDSRKSKTYV 533
Y G I++GTPPQ VV DTGSSNLWV ++ C+ + K+D+ KS T+V
Sbjct: 67 FYLGNITLGTPPQPATVVLDTGSSNLWVIDAACKTQACNGYPDSGYTKQKFDTTKSTTFV 126
Query: 534 ANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGMAF 713
+F+IQYGSGS +G+L D + GGL V+ F + + F DGILG+ +
Sbjct: 127 KETRKFSIQYGSGSCNGYLGKDVLNFGGLTVQSQEFGVSTHLADV-FGYQPVDGILGLGW 185
Query: 714 STIAVDHVTP 743
+AVD V P
Sbjct: 186 PALAVDQVVP 195
>AF210248-1|AAF19445.1| 396|Caenorhabditis elegans aspartic
protease 1 protein.
Length = 396
Score = 109 bits (262), Expect = 3e-24
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 9/190 (4%)
Frame = +3
Query: 201 LALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSP----EPLSNYLDA 368
LAL+A+ A+ +VP H+ ++ R + G L ++ +P +Y D
Sbjct: 7 LALVAACSAAVIQVPTHKTESLRAKLIKEGKYTAFLASQHAARAQQLNTGFQPFVDYFDD 66
Query: 369 QYYGVISIGTPPQSFKVVFDTGSSNLWV-----PSKKCHYTNIACLLHNKYDSRKSKTYV 533
Y G I++GTPPQ VV DTGSSNLWV ++ C+ + K+D+ KS T+V
Sbjct: 67 FYLGNITLGTPPQPATVVLDTGSSNLWVIDAACKTQACNGYPDSGYTKQKFDTTKSTTFV 126
Query: 534 ANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGMAF 713
+F+IQYGSGS +G+L D + GGL V+ F + + F DGILG+ +
Sbjct: 127 KETRKFSIQYGSGSCNGYLGKDVLNFGGLTVQSQEFGVSTHLADV-FGYQPVDGILGLGW 185
Query: 714 STIAVDHVTP 743
+AVD V P
Sbjct: 186 PALAVDQVVP 195
>AF208526-1|AAF19442.1| 396|Caenorhabditis elegans aspartic
protease 1 protein.
Length = 396
Score = 109 bits (262), Expect = 3e-24
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 9/190 (4%)
Frame = +3
Query: 201 LALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSP----EPLSNYLDA 368
LAL+A+ A+ +VP H+ ++ R + G L ++ +P +Y D
Sbjct: 7 LALVAACSAAVIQVPTHKTESLRAKLIKEGKYTAFLASQHAARAQQLNTGFQPFVDYFDD 66
Query: 369 QYYGVISIGTPPQSFKVVFDTGSSNLWV-----PSKKCHYTNIACLLHNKYDSRKSKTYV 533
Y G I++GTPPQ VV DTGSSNLWV ++ C+ + K+D+ KS T+V
Sbjct: 67 FYLGNITLGTPPQPATVVLDTGSSNLWVIDAACKTQACNGYPDSGYTKQKFDTTKSTTFV 126
Query: 534 ANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGMAF 713
+F+IQYGSGS +G+L D + GGL V+ F + + F DGILG+ +
Sbjct: 127 KETRKFSIQYGSGSCNGYLGKDVLNFGGLTVQSQEFGVSTHLADV-FGYQPVDGILGLGW 185
Query: 714 STIAVDHVTP 743
+AVD V P
Sbjct: 186 PALAVDQVVP 195
>AL132948-20|CAD31821.1| 391|Caenorhabditis elegans Hypothetical
protein Y39B6A.24 protein.
Length = 391
Score = 107 bits (256), Expect = 1e-23
Identities = 67/198 (33%), Positives = 101/198 (51%), Gaps = 9/198 (4%)
Frame = +3
Query: 177 MGKISLFFLALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVT-GPSPEPLS 353
M I L FLA S+ A++++P + R G E L ++ +P+S
Sbjct: 1 MHLIFLLFLAPFCSA--AVFQLPTKSTGSLRAKLIRAGKYQEFLITQHAARLNTISQPIS 58
Query: 354 NYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIAC-------LLHNKYDS 512
+Y D Y G ++GTPPQ +V DTGS+N+WV C N+ C K+D+
Sbjct: 59 DYSDEVYLGNFTVGTPPQPVSLVLDTGSANMWVIDASC--DNMFCNGWIGSNYTRQKFDT 116
Query: 513 RKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTV-GGLKVRRPTFAEAVSEPGLAFVAAKF 689
KS ++ +F+IQYG G SG+L TD V + GGL +R+ A ++ + F
Sbjct: 117 SKSSSFSRENRKFSIQYGKGLCSGYLGTDTVGLGGGLTIRKQELGIA-NKLDVDFAVQPM 175
Query: 690 DGILGMAFSTIAVDHVTP 743
DGI G+A+ +AVD +TP
Sbjct: 176 DGIFGLAWPALAVDQITP 193
>AL132948-19|CAD31820.1| 395|Caenorhabditis elegans Hypothetical
protein Y39B6A.23 protein.
Length = 395
Score = 105 bits (253), Expect = 3e-23
Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 9/193 (4%)
Frame = +3
Query: 192 LFFLALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVT----GPSPEPLSNY 359
+F L L+ A+ ++P + R + G E L ++ +PL +Y
Sbjct: 4 VFLLFLVPFCSAAVLQLPTKSTGSLRAKLIQAGKYQEFLASQHAARLQQLNTGSQPLIDY 63
Query: 360 LDAQYYGVISIGTPPQSFKVVFDTGSSNLWV-----PSKKCHYTNIACLLHNKYDSRKSK 524
D Y I++GTPPQ VV DT S+NLWV S+ C+ + K++ KS
Sbjct: 64 YDDMYLANITVGTPPQPASVVLDTASANLWVIDAACNSQACNGNPGSGYTKQKFNPNKSS 123
Query: 525 TYVANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILG 704
T+V +F+IQYGSG+ SG+L TD + +GGL V+ F A + G + DGI G
Sbjct: 124 TFVKGTRRFSIQYGSGTSSGYLGTDVLQLGGLTVKAQEFGVA-TNLGSVLGSEPMDGIFG 182
Query: 705 MAFSTIAVDHVTP 743
+ + I+VD VTP
Sbjct: 183 LGWPAISVDQVTP 195
>AJ009861-1|CAA08899.1| 395|Caenorhabditis elegans aspartic
protease protein.
Length = 395
Score = 105 bits (251), Expect = 6e-23
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Frame = +3
Query: 195 FFLALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSP----EPLSNYL 362
F L+ + + A+ +VP H+ ++ R + G L ++ +P +Y
Sbjct: 4 FVLSPLWACSAAVIQVPTHKTESLRAKLIKEGKYTAFLASQHAARAQQLNTGFQPFVDYF 63
Query: 363 DAQYYGVISIGTPPQSFKVVFDTGSSNLWV-----PSKKCHYTNIACLLHNKYDSRKSKT 527
D Y G I++GTPPQ VV DTGSSNLWV ++ C+ + K+D+ KS T
Sbjct: 64 DDFYLGNITLGTPPQPATVVLDTGSSNLWVIDAACKTQACNGYPDSGYTKQKFDTTKSTT 123
Query: 528 YVANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGM 707
+V +F+IQYGSGS +G+L D + GGL V+ F + + F DGILG+
Sbjct: 124 FVKETRKFSIQYGSGSCNGYLGKDVLNFGGLTVQSQEFGVSTHLADV-FGYQPVDGILGL 182
Query: 708 AFSTIAVDHVTP 743
++ +AVD V P
Sbjct: 183 GWTALAVDQVVP 194
>AL132948-18|CAD31819.1| 390|Caenorhabditis elegans Hypothetical
protein Y39B6A.22 protein.
Length = 390
Score = 95.9 bits (228), Expect = 3e-20
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 8/197 (4%)
Frame = +3
Query: 177 MGKISLFFLALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKY-DVTGPSPEPLS 353
M I L F+A S+ A+ ++P + R + G E L ++ PL+
Sbjct: 1 MHLIFLLFIATFCSA--AVLQLPTKSTGSLRAKLIQSGKYPEFLASQHVSRLNSGALPLA 58
Query: 354 NYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIAC-----LLHN--KYDS 512
+Y+D Y I++GTPPQS VV TGS+N WV C T+ AC H K+ S
Sbjct: 59 DYMDEIYTANITVGTPPQSASVVMGTGSANFWVVGAGC--TSPACNGFPDSGHTKLKFYS 116
Query: 513 RKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFD 692
KS ++V +F I Y +G+ SG+L TD + +GGL V+ FA ++ D
Sbjct: 117 NKSSSFVDLNRKFFINYPTGACSGYLGTDVLQLGGLTVKNQEFA-VTTQISDQMGHFPLD 175
Query: 693 GILGMAFSTIAVDHVTP 743
G+LG+A+ +AVD +TP
Sbjct: 176 GVLGLAWPPVAVDQITP 192
>AF045640-8|AAC02571.1| 394|Caenorhabditis elegans Hypothetical
protein C11D2.2 protein.
Length = 394
Score = 90.6 bits (215), Expect = 1e-18
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Frame = +3
Query: 315 KYDVTGPSPEPLSNYLDAQYYGVISIGTP-----PQSFKVVFDTGSSNLWVPSKKCHYTN 479
K+ + + ++++ D Y+G I++GTP Q+F VV DTGSSN+WVP C +
Sbjct: 47 KHTIHKGQHQHVADFRDFAYFGNITLGTPIESTAEQTFLVVLDTGSSNVWVPDNSCGIDD 106
Query: 480 --IACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGG--LKVRRPTFAE 647
AC KY S +Y +GT F+I YG+GS SG+ D + L ++ F +
Sbjct: 107 KKSACTYKKKYFGTDSSSYEKDGTPFSISYGTGSASGYFGKDTLCFSDTTLCIKSQIFGQ 166
Query: 648 AVSEPGLAFVAAKFDGILGMAFSTIAVDHVTP 743
A + F + DGILG+ F+ +AV V P
Sbjct: 167 A-NNIAPFFANQEIDGILGLGFTDLAVHSVPP 197
>U64851-4|AAC47989.1| 389|Caenorhabditis elegans Hypothetical
protein F28A12.4 protein.
Length = 389
Score = 90.2 bits (214), Expect = 2e-18
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 7/179 (3%)
Frame = +3
Query: 351 SNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSKTY 530
++Y+ +Y G I++GTP Q+F VV DTGS+NL +P C C ++ + S TY
Sbjct: 65 TDYVYYEYMGNITVGTPDQNFIVVLDTGSANLLIPGTNC---TTYCEKKRLFNEKASSTY 121
Query: 531 VANGTQFAIQYGSGSLSGFLSTDDVTVGG-----LKVRRPTFAEAVSEPGLAFVAAKFDG 695
+A + I+Y SG G L D V +GG L + R ++ G F + +G
Sbjct: 122 IATNRPWQIKYASGDAYGTLGIDTVKIGGSGEAQLAIPR-SYLGVADTVGSDFKWSPKEG 180
Query: 696 ILGMAFSTIAVDHVTPGVRQHGGSGTRAARLLV--LSQQGPRGRQRAASCCWAGSDPAH 866
I G+AF+ +AVD++TP + G L Q+G G + + + G D H
Sbjct: 181 IFGLAFTALAVDNITPPIINAINQGLLDQPLFTTWFGQRGAPGTSASGAFTYGGLDKNH 239
>Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical
protein C15C8.3 protein.
Length = 428
Score = 52.4 bits (120), Expect(2) = 2e-16
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Frame = +3
Query: 474 TNIACLLHNKYDSRKSKTYVANGTQFAIQYGSGSLSGFLSTDDVTVGGLKV--RRPTFAE 647
T AC ++++S S +YV NG +F + Y +G + GF D V F +
Sbjct: 144 TTDACQSKHRFNSSLSSSYVTNGQKFDMTYNTGEVKGFFGVDTFCFTNTSVCATGQVFGQ 203
Query: 648 AVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPGV--RQHGGSGTRAARLLVLSQQGPRGR 821
A + G AF DGI+G+ + +AV+ TP + + G + ++ L+ GP +
Sbjct: 204 ATT-IGEAFAKQPEDGIIGLGWPALAVNQQTPPLFNLMNQGKLDQPYFVVYLANIGPTSQ 262
Query: 822 QRAASCCWAGSDPAH 866
+ G D H
Sbjct: 263 INGGAFTVGGLDTTH 277
Score = 51.6 bits (118), Expect(2) = 2e-16
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 234 YRVPLHRMKTARTHFHEVGTEL-ELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQS 410
YR + + A+ E E ELL K S P+ +Y D Y IS+G+P Q+
Sbjct: 25 YRPNMRQRMNAKGKLAEYEKERNELLSKKSLQLASSSSPVIDYEDMAYMVQISLGSPAQN 84
Query: 411 FKVVFDTGSSNLWVPSKKC 467
F + D+GSSNLWVP C
Sbjct: 85 FVLFIDSGSSNLWVPDITC 103
>AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical
protein F59D6.2 protein.
Length = 380
Score = 79.8 bits (188), Expect = 2e-15
Identities = 52/177 (29%), Positives = 82/177 (46%)
Frame = +3
Query: 201 LALIASSVMALYRVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNYLDAQYYG 380
LAL+ + + L + R G EL RL+ TG E + ++ D Y
Sbjct: 9 LALLVFCSAGQFSISLEKSVPLREQLIREGRELA--RLQQLSTGN--ESIYDHFDEYYTV 64
Query: 381 VISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIACLLHNKYDSRKSKTYVANGTQFAIQ 560
+ IGTP Q F+V DT SSNLWV +C + +Y+ S T++A + F +
Sbjct: 65 SVRIGTPAQHFEVALDTTSSNLWVFGVECKSQSCQGHRIREYNRTASSTFIAGTSNFVLP 124
Query: 561 YGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVD 731
+ G +SG L D++ G K++ F L+ V FDG+LG+ + A++
Sbjct: 125 FNDGDVSGDLGKDNIQFAGSKIQNQDFGIGTDATRLSGVT--FDGVLGLGWPATALN 179
>AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical
protein F59D6.3 protein.
Length = 474
Score = 70.1 bits (164), Expect = 2e-12
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 4/188 (2%)
Frame = +3
Query: 180 GKISLFFLALIASSVMALYRVPLHRMKTARTHFHEVGTE-LELLRLKYDVTGPSPEPLSN 356
GK+ + L L+A + + + + + R G EL R++ TG +
Sbjct: 91 GKL-ISLLGLVALCSAGQFSISVEKSGSLREQLIREGRYGQELARIQQLSTGNVS--FFD 147
Query: 357 YLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNI---ACLLHNKYDSRKSKT 527
+ D Y + IGTP Q F+V FDT SSNLWV +C N +Y+ S T
Sbjct: 148 HFDEYYTAGVRIGTPAQHFQVAFDTTSSNLWVFGVECRSQNCHGGRGRRDREYNRTASST 207
Query: 528 YVANGTQFAIQYGSGSLSGFLSTDDVTVGGLKVRRPTFAEAVSEPGLAFVAAKFDGILGM 707
+VA + F + Y G +SG + D G ++ F + FDG+LG+
Sbjct: 208 FVAGTSSFNLPYDGGHVSGNVGKDTAQFAGFTIQSQDF--GIGTAATRLFGETFDGVLGL 265
Query: 708 AFSTIAVD 731
+ A++
Sbjct: 266 GWPATALN 273
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = -3
Query: 576 GCRSRTVSRTGCHSRRTSWTCGCRTCCAANKRCWCS 469
GC GC R C CR CC + C C+
Sbjct: 74 GCGGGGGGGCGCCCCRPKCCCCCRRCCTCCRTCCCT 109
>Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical
protein T21B4.1 protein.
Length = 306
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 556 IANWVPFATYVLDLRLSYLLCSKQ 485
+ NW F T L +++SYLLC+K+
Sbjct: 243 LQNWSNFGTTPLIIQISYLLCNKR 266
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 703 PRIPSNLAATKASPGSDTASANVGRRTLSPPTVTSSVERKPERL 572
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 2 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 43
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 703 PRIPSNLAATKASPGSDTASANVGRRTLSPPTVTSSVERKPERL 572
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 4 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 45
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 703 PRIPSNLAATKASPGSDTASANVGRRTLSPPTVTSSVERKPERL 572
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 1 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 42
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 456 KAPRGWRIRCRIPP*TTAAACRY*SLRSTEHQDNLTMVRVKG-QSHRILISTAP 298
KAP R ++PP T AAA R S+ +T +R G +S + ++T P
Sbjct: 717 KAPSTVTTRSKVPPPTAAAAVRIVSVTTTTTPTKTAELRKPGARSPKTTVATVP 770
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 703 PRIPSNLAATKASPGSDTASANVGRRTLSPPTVTSSVERKPERL 572
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 39 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 80
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 703 PRIPSNLAATKASPGSDTASANVGRRTLSPPTVTSSVERKPERL 572
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 113 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 154
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 546 GCHSRRTSWTCGCRTCCAANKRCWCS 469
GC R C CR CC + C C+
Sbjct: 85 GCCCCRPRCCCCCRRCCTCCRTCCCT 110
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 546 GCHSRRTSWTCGCRTCCAANKRCWCS 469
GC R C CR CC + C C+
Sbjct: 83 GCCCCRPRCCCCCRRCCTCCRTCCCT 108
>Z48178-4|CAA88202.1| 521|Caenorhabditis elegans Hypothetical
protein C05C10.3 protein.
Length = 521
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +3
Query: 393 GTPPQSFKVVFDTGSSNLWVPSKKCHYTN--IACLLHNKYDSRKSKTYVANGTQFAIQYG 566
G P + + TG L S N + LL + + +YV +FA QY
Sbjct: 65 GIPENLIQAITKTGQKGLTCVSNNAGVDNWGLGLLLQTRQIKKMISSYVGENGEFARQYL 124
Query: 567 SGSL 578
SG L
Sbjct: 125 SGEL 128
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 546 GCHSRRTSWTCGCRTCCAANKRCWCS 469
GC R C CR CC + C C+
Sbjct: 84 GCCCCRPRCCCCCRRCCTCCRTCCCT 109
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 546 GCHSRRTSWTCGCRTCCAANKRCWCS 469
GC R C CR CC + C C+
Sbjct: 85 GCCCCRPRCCCCCRRCCTCCRTCCCT 110
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,344,718
Number of Sequences: 27780
Number of extensions: 422681
Number of successful extensions: 1424
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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