Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_K15
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   210   2e-55
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    28   1.6  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    28   1.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.7  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   2.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.6  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    26   8.4  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   8.4  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   8.4  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  210 bits (514), Expect = 2e-55
 Identities = 90/137 (65%), Positives = 110/137 (80%)
 Frame = +2

Query: 332 RIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVR 511
           RIPERVVHAKG+GAFG FE T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT R
Sbjct: 53  RIPERVVHAKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTAR 112

Query: 512 DPRGFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLT 691
           DPRGFA+KFYTD+G++D+VGNNTP+FF+RDP  FP FIHTQKRNP   +KD  MFWD+L+
Sbjct: 113 DPRGFALKFYTDEGIFDMVGNNTPVFFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLS 172

Query: 692 LRPETIHQLLYLFGDRG 742
              E+IHQ++ LF D G
Sbjct: 173 QNAESIHQVMILFSDLG 189



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +1

Query: 211 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 327
           TT +G P+    A   VGK GP LLQD + +D    FDR
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDR 51



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 732 ETAGIPDGYRHMNGYGSHTFKLVNSQGVGYW 824
           +  G P  YR M+G+ SHT+K VN +G  Y+
Sbjct: 187 DLGGTPYSYRFMDGFSSHTYKFVNDKGEFYY 217


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 590 FIRDPTLFPSFIHTQKRNPATHLKDP 667
           +++DPTL P F+HT  R   T   +P
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQTDNDNP 531


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +1

Query: 25  YREFLKILGNLSSRYAPSESLRGIKQRTPHSKKGTYKMASRDPA----TDQLIN-YKKTL 189
           YR+ LKI+G  S   +  ES   +K      + G YK+ ++  A    TD+ IN Y+K +
Sbjct: 252 YRKNLKIIGCNSLLLSLVESNSLLKNMVAKFEAGKYKVLNKKIAETSLTDECINSYRKLM 311

Query: 190 KD-SPGFITTKS 222
            + S  F+ T S
Sbjct: 312 NECSTKFVITMS 323


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 530 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 405
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 590 FIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQ-LLYLFGDRGYS 748
           F  +P  +   +H    N    L     FW F +++PE  H+ +L+L G  G S
Sbjct: 34  FPNEPVDYEGRMHAGHLNQTDQLDGDLFFWMFESVKPEYEHRSILWLNGGPGCS 87


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 791 ECMGTISIHMSVAIRNTRGLQTSKEVDGWSLVLRSKSPKTCLDLSDVLQGFSSE 630
           E  GT+    S   +NT   Q  K+ +  S +L+S++ K C+D   +   F  +
Sbjct: 661 EVQGTLEEATSYYQKNTELQQLLKQNESASELLKSRNEKLCVDYDKLRSVFEED 714


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 154 LGLLKPFCMFPSYYAAFVV*YHGATHW 74
           LG+ +PF ++ +Y    V  YH  + W
Sbjct: 334 LGISRPFMVYSTYQQVLVETYHQLSKW 360


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 287 RMLTFLMKCHPLTGXRIPERVVH 355
           + +TFL+   P  G RIP   VH
Sbjct: 123 KTVTFLLTAQPYNGPRIPNASVH 145


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 504 VSADPLSPPTVENLTAIGVLLPMDSNTL 421
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,882,051
Number of Sequences: 5004
Number of extensions: 86907
Number of successful extensions: 224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)