Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_K13
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    31   0.27 
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    29   1.1  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    28   1.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   5.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   7.6  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 209 ELTPTQVKDQPSVTFEAEADAFYTLVFTDPDNYDGPELVYREWHHWLVGN 358
           E  P   K       E E D  +  VFTDPD  D    +Y   H WL+G+
Sbjct: 201 EADPNSQKALAKQILEQELDMIHQAVFTDPD--DSSVWIY---HRWLMGH 245


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 256 LKSDRRLILHL-CRSQLISLRRYSTARVFKLN 164
           LK D RL++H  C S  ISL+R     V KL+
Sbjct: 289 LKVDTRLVVHAYCHSDFISLKRIKELEVEKLS 320


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 56  FWRS-YRHDVLIMSLVAQAFEASKIVPD 136
           FW+S YR D+LI +L    FE+  IVPD
Sbjct: 122 FWKSQYRSDILINNLTETLFES--IVPD 147


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 217 SQLISLRRYSTARVFKLNVLSWSDGNNIRHYFASFECLCY 98
           S++  L  Y       L +L W + NN+R  F   ECLC+
Sbjct: 263 SRMDELSNYERIEQLALYLLCWGEANNVR--FMP-ECLCF 299


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 134  DVIPVAPTKNIELKYPSGAIASQGNELTPTQVK 232
            D+I    TK +E+ +P GA       LTP  VK
Sbjct: 994  DLISKGATKPLEIAFPDGASILVAFRLTPVPVK 1026


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 98  VAQAFEASKIVPDV-IPVAPTKNIELKYPSGAIASQGNELTPTQVKDQPSVTFEAEADAF 274
           VAQ   +  + PD  + VA  +N EL++      S GNELT       P  T +   + +
Sbjct: 332 VAQHITSLAVHPDGNLFVAGLENGELRFFE---TSSGNELTKFGPHSSPVKTLQFGENGY 388

Query: 275 YTLVFTDPDN 304
           + +V T+ D+
Sbjct: 389 WLVVTTNDDS 398


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 220 RSQLISLRRYSTARVFKLNVLSWSDGNNIR 131
           RS + S+ ++  A+   L +L W + NN+R
Sbjct: 354 RSHMRSMTQFERAQQIALWLLLWGEANNVR 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,926
Number of Sequences: 5004
Number of extensions: 46403
Number of successful extensions: 261
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)