Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_J21
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    28   1.5  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   4.6  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   4.6  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   8.1  

>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 455 LNVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQEINEKLAPKIKAAYDDFAK 622
           LN   +   +REK+Q+  +   + S KL    +  V++I+++   K    Y DFAK
Sbjct: 120 LNNSLSPAEIREKIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKTDKNY-DFAK 174


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 435 LGRALDVLPRLFQSLLGLAVRVSERXPGDSW 343
           +G  +  L RLF SL GL    ++  PG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 173 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT 262
           ++   DFFK +    ++ H TL ++ NSL+
Sbjct: 56  KKSEQDFFKMLSSRDRDAHSTLRKRSNSLS 85


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 86  PHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTK 265
           P S S   + A    +      L +   V R    F + +EH+     K+LE+Q + L +
Sbjct: 171 PSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQ 229

Query: 266 SKDA 277
           SKDA
Sbjct: 230 SKDA 233


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +2

Query: 461  VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQEINEKLAPKIKAAYDDFAKNTQEVI 640
            ++KN  AL EK +  ++  +QE+ K        V  +NE++    K       KNT+   
Sbjct: 1357 LKKNCEAL-EKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQANTKNTRLAA 1415

Query: 641  KKIQEAANAKQ 673
               ++  N K+
Sbjct: 1416 AWNEKCENLKK 1426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,917
Number of Sequences: 5004
Number of extensions: 36311
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)