Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_J19
         (1225 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   8.8  
U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protei...    29   8.8  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    29   8.8  
AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular col...    29   8.8  

>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
 Frame = -3

Query: 860 CXPAPPXXXXTXXXPXGPXKPRXP-HPXPXGPXRXSXXARAXPXTXAPKDP 711
           C PA P        P  P +P  P    P GP      A   P T  PKDP
Sbjct: 94  CEPAKPVCPPGPPGP--PGEPGQPGSAGPPGPPGEDNTATFAPITCPPKDP 142


>U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protein
           34 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = -3

Query: 860 CXPAPPXXXXTXXXPXGPXKPRXPHPXPXGPXRXSXXARAXPXTXAPKDPXLRG 699
           C P PP    T   P  P KP  P   P  P R        P T  P  P  +G
Sbjct: 100 CLPGPPGPAGTPGKPGRPGKPGAP-GLPGNPGRPPQQP-CEPITPPPCKPCPQG 151


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = -3

Query: 860 CXPAPPXXXXTXXXPXGPXKPRXPHPXPXGPXRXSXXARAXPXTXAPKDPXLRG 699
           C P PP    T   P  P KP  P   P  P R        P T  P  P  +G
Sbjct: 100 CLPGPPGPAGTPGKPGRPGKPGAP-GLPGNPGRPPQQP-CEPITPPPWKPCPQG 151


>AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular
           collagen RAM-4 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = -3

Query: 860 CXPAPPXXXXTXXXPXGPXKPRXPHPXPXGPXRXSXXARAXPXTXAPKDPXLRG 699
           C P PP    T   P  P KP  P   P  P R        P T  P  P  +G
Sbjct: 100 CLPGPPGPAGTPGKPGRPGKPGAP-GLPGNPGRPPQQP-CEPITPPPCKPCPQG 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,791,822
Number of Sequences: 27780
Number of extensions: 93832
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3380764392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)