Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_J18
(913 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 43 3e-04
04_03_0111 - 11361954-11363510 32 0.73
04_03_0515 + 16698589-16701066 29 5.1
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 5.1
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 29 6.8
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 29 6.8
01_06_1543 - 38138253-38138855,38139000-38139239 29 6.8
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 28 9.0
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 43.2 bits (97), Expect = 3e-04
Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 2/131 (1%)
Frame = +2
Query: 164 AXLFASVGYQVTVYDVVAKQITDAIEDIKYQLHTLENDGLL-RGELKAS-EQFQCIKGST 337
A L A+ G V + D ++ A++ I L L G L + + S EQ +C+
Sbjct: 26 AQLAAAAGCGVLLLDSDTAALSRAVDSISSSLRRLVAKGQLSQASCEHSIEQIKCVSSVQ 85
Query: 338 DLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKS 517
+L + A V E + E+ D+KKK+F LD + + I
Sbjct: 86 EL----RDADLVIEAIVESEDIKKKLFVELDKITKPSAILASNTSSISITRLASATNRPC 141
Query: 518 QVIVSHPVNPP 550
QVI H NPP
Sbjct: 142 QVIGMHFFNPP 152
>04_03_0111 - 11361954-11363510
Length = 518
Score = 31.9 bits (69), Expect = 0.73
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 507 NISLRSLFLIR*-IHLITYPLVEIVPAPWTKPEVAKKTREIMEEIGQQP 650
N+ + L ++R +++ TYP+ ++ AP PE AKKT I+E + +QP
Sbjct: 240 NLEPKGLSMLRQWLNVPTYPVGPLLRAPAPSPE-AKKTSPILEWLDEQP 287
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 473 YLLNLIISCYRQLRCRDSGTPFF 405
Y N++I+CYR+ R D G P F
Sbjct: 190 YTYNILINCYRRARRPDLGLPVF 212
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 795 SHSKSFRHNFINIRYINNFVVNETPNFIQG 706
S S SF NF+N +YI VV +TP F +G
Sbjct: 760 SRSTSFPDNFLNAKYIPETVV-DTPAFKEG 788
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 573 IVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLN 689
++PAPW K K +E + ++GQ + + I+G +N
Sbjct: 504 VLPAPWLKYHDTGKEKECLPQVGQWNMVNKKVINGCKVN 542
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 573 IVPAPWTKPEVAKKTREIMEEIGQQPVSLT 662
IVPAPW++P K + I+++ G+ + T
Sbjct: 282 IVPAPWSRPLSEKVIKAILKDNGETKTTTT 311
>01_06_1543 - 38138253-38138855,38139000-38139239
Length = 280
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 579 PAPWTKPEVAKKTREIMEEIGQQPV 653
PAP P+VAKK +E++E+ G PV
Sbjct: 84 PAPGA-PDVAKKAKELLEQAGFGPV 107
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 561 PLVEIVPAPWTKPEVAKKTREIMEEIGQQPVSLTREIDGFVLNRI 695
PL+EIV + T P+V ++ ++I + PV + GF +NR+
Sbjct: 475 PLLEIVRSNHTSPQVVVDLLDVGKKIKKTPV-VVGNCTGFAVNRM 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,519,374
Number of Sequences: 37544
Number of extensions: 441960
Number of successful extensions: 959
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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