Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_J14
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   168   9e-43
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   5.2  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  168 bits (409), Expect = 9e-43
 Identities = 81/105 (77%), Positives = 89/105 (84%)
 Frame = +1

Query: 202 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSXVQKRFNIPEQSVELYAEKVA 381
           GYSG EVRVTP RSEIII AT TQ VLGEKGRRIRELT+ VQKRF   E +VELYAEKV 
Sbjct: 35  GYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQ 94

Query: 382 TRGLCAIAQXESLRYKLIGGLXVRRACYGVLRFIMESGARGCEVV 516
            RGLCA+AQ ESLRYKL+ GL VRRA YGVLR++ME+GA+GCEVV
Sbjct: 95  NRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVV 139



 Score = 49.2 bits (112), Expect = 9e-07
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +2

Query: 518 VSGKLRGXRAKSMKXVXGLMIHSGXPCHDXVNTATR 625
           +SGKLR  RAKSMK   G MIHSG P  D +++ATR
Sbjct: 140 ISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATR 175


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 256 MATRTQSVLGEKGRRIRELTSXVQKRFNIPEQSVELYAEKVATRGLCAI-AQXESLRYKL 432
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 433 IG 438
           +G
Sbjct: 784 LG 785


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,415
Number of Sequences: 5004
Number of extensions: 46154
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)