Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_I16
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   5.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   5.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 486 PPXXPPPXPXPPGPXPP 536
           PP  PPP P PPG  PP
Sbjct: 5   PPGNPPPPPPPPGFEPP 21



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 486 PPXXPPPXPXPPGPXPPXPGXG 551
           PP  PPP   PP   PP P  G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 461 PXPPGXGXAP*XAPPRPPXP 520
           P PP  G  P   PP PP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -3

Query: 544 PGXGGXGPGGXGXG-GGXSGG 485
           PG  G GPGG G G GG  GG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGG 257



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 544 PGXGGXGPGGXGXGGGXSGG 485
           PG    GPGG G G G  GG
Sbjct: 230 PGGFEGGPGGFGGGPGGFGG 249


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 486 PPXXPPPXPXPPGPXPPXPGXG 551
           P   PPP P   GP PP P  G
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPG 769



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 486 PPXXPPPXPXPPGPXPPXP 542
           PP  PPP     GP PP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 213 PPPPRXPGXGXPXPPRXP 266
           PPPP   G G P PP  P
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 486 PPXXPPPXPXPPGPXPPXP 542
           P   PPP P PP P PP P
Sbjct: 802 PFKAPPPAPLPP-PAPPLP 819


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 486 PPXXPPPXPXPPGPXPPXPG 545
           PP  PP    PPG   P PG
Sbjct: 522 PPMVPPGMALPPGMPAPFPG 541


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/58 (27%), Positives = 17/58 (29%)
 Frame = +2

Query: 383  PXPGAGXGXVPXPXGXXXAXGAXRXXPXPPGXGXAP*XAPPRPPXPXXGAPXPXGGXP 556
            P P      VP P G           P  P    AP    P+P       P P  G P
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP--PVPKPSVAAPPVPAPSSGIP 1179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,004
Number of Sequences: 5004
Number of extensions: 16719
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)