Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_I09
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 37 0.025
03_06_0155 - 32031370-32031707,32033066-32033279 34 0.18
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 32 0.71
02_04_0531 + 23707978-23709021 31 1.2
02_04_0553 - 23808328-23809530 30 2.2
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 30 2.2
05_04_0158 + 18613265-18615304 30 2.9
02_04_0534 + 23725051-23726253 29 5.0
02_03_0357 + 18075171-18077240 29 5.0
11_06_0722 - 26678873-26680843 28 8.7
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 28 8.7
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 36.7 bits (81), Expect = 0.025
Identities = 23/104 (22%), Positives = 48/104 (46%)
Frame = +3
Query: 528 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKK 707
E+ ++ ++ + AMLQ +KD N +Q+K ++ ++E +TK Q +E
Sbjct: 1431 EEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYH 1490
Query: 708 ISLSIRIKPLTIEGLSVDKLRQKARNSGSASFXLETEKYDLXRE 839
++ + L +E L K ++ R + S + +DL +
Sbjct: 1491 ELKDVKEQKLCLERLDSSKETKRRRKAESEMLSALKKVHDLEHQ 1534
>03_06_0155 - 32031370-32031707,32033066-32033279
Length = 183
Score = 33.9 bits (74), Expect = 0.18
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 522 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 701
IEE +QR EEA + +Q + +A K + + + G+ + R K+ E L E+
Sbjct: 98 IEELKQREEEATQAQQQADVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSEALVEQ 157
Query: 702 KKIS 713
+K++
Sbjct: 158 RKLT 161
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 31.9 bits (69), Expect = 0.71
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 519 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 698
+I E+R+R + ++ A+L+AMK+ N ++ E N +LE K+QL+E
Sbjct: 41 EIAEERERFQLEQRGNDALLEAMKE-ELVAANNELEAAKEEISRKNNELE--SVKKQLQE 97
Query: 699 EK 704
+
Sbjct: 98 SE 99
>02_04_0531 + 23707978-23709021
Length = 347
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 51 PPRSPRTPHSNVAVLPVQEPVP 116
PP SPRTPH+ V LPV +P
Sbjct: 36 PPDSPRTPHTYVGFLPVFGDLP 57
>02_04_0553 - 23808328-23809530
Length = 400
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 51 PPRSPRTPHSNVAVLPVQEPVP 116
PP SPRTPH+ ++LPV +P
Sbjct: 72 PPDSPRTPHTYGSLLPVYGDLP 93
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 51 PPRSPRTPHSNVAVLPVQEPVP 116
PP SPRTPH+ ++LPV +P
Sbjct: 72 PPDSPRTPHTYGSLLPVYGDLP 93
>05_04_0158 + 18613265-18615304
Length = 679
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Frame = +3
Query: 525 EEKRQRLEEAEKKRQAML-----QAMKDASKTGPNFTIQKK----SENFGLSNAQLERNK 677
+EK ++ +E E K Q L +AMK KTG N I+KK +E +A++ ++K
Sbjct: 608 QEKVEKNQEKEMKIQEKLGEIFDKAMKSEEKTGQNPGIEKKIQDTAEKKQEHDARVVQDK 667
Query: 678 TKEQLEEEKKI 710
++ +E KKI
Sbjct: 668 VEKIQDEAKKI 678
>02_04_0534 + 23725051-23726253
Length = 400
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 51 PPRSPRTPHSNVAVLPVQEPVP 116
PP SPRTPH+ + LP+ +P
Sbjct: 73 PPDSPRTPHTYGSFLPIYGDLP 94
>02_03_0357 + 18075171-18077240
Length = 689
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = +3
Query: 618 TIQKKSENFGLSNAQLERNKT-----KEQLEEEKKISLSIRIKP 734
+I++K +NF L+ ++ RN+T QL EE KIS+S + P
Sbjct: 594 SIKEKFKNFNLAFEEIYRNQTTWKVPDPQLREELKISISENVIP 637
>11_06_0722 - 26678873-26680843
Length = 656
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 672 NKTKEQLEEEKKISLSIRIKPLTIEGLSVDK 764
NKTK+ +E+K++ LS+ +K IE L ++
Sbjct: 418 NKTKKGRKEDKRVRLSMDVKKTVIETLKKNR 448
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 259 DRRSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 438
D SR + ++ S T + R S TS N P+R S++ + S PS+R P
Sbjct: 38 DVASRYKNGLSAHSAATTARRCTSPSPGRTSANECTPEPKRAQSADRRRPSTPSSRVSTP 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,646,352
Number of Sequences: 37544
Number of extensions: 302202
Number of successful extensions: 1313
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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