Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_I04
         (1028 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    42   1e-04
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    40   8e-04

>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +1

Query: 166 FTXIAFEXLKTDYKNPIDQCNSLNPXXXXXXXXXXXXXXXXXXSGEWFSLLINXPLILYH 345
           F  I F  L+ DY NPID CN LN                     +W   L N PL+++H
Sbjct: 29  FCVIMFSDLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLANLPLLVFH 88

Query: 346 IHR 354
            ++
Sbjct: 89  ANQ 91


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 39.5 bits (88), Expect = 8e-04
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +1

Query: 160 LYFTXIAFEXLKTDYKNPIDQCNSLNPXXXXXXXXXXXXXXXXXXSGEWFSLLINXPLIL 339
           +YFT + +  LK D+ NPID    LN                   SG W + L+N P++ 
Sbjct: 22  MYFT-VMYSDLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLA 80

Query: 340 YHIHRYYTRPVMSXPGLYDPTSI 408
           ++      + +MS   ++D T+I
Sbjct: 81  WN-----AKMIMSNTHMHDSTTI 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,437
Number of Sequences: 5004
Number of extensions: 30932
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)