Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_I04
         (1028 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical pr...    97   2e-20
AC006812-2|AAK39349.1|   56|Caenorhabditis elegans Hypothetical ...    40   0.002

>Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical
           protein T09E8.3 protein.
          Length = 145

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 53/129 (41%), Positives = 70/129 (54%)
 Frame = +1

Query: 91  FTFSRPFAYIVCLNNRLHX*YXSLYFTXIAFEXLKTDYKNPIDQCNSLNPXXXXXXXXXX 270
           FTF+  F Y++ L       + ++Y T I  + L+TDYKNPI+QC +LN           
Sbjct: 3   FTFAA-FCYLLALIAVGFCIFFAIY-TVICVDELRTDYKNPIEQCRNLNQLILPEYIIHG 60

Query: 271 XXXXXXXXSGEWFSLLINXPLILYHIHRYYTRPVMSXPGLYDPTSIXNAHVLTSCQRXXW 450
                   S +  S+L N PL  YHI+ Y  RPVMS PG+YDPT+I N   L+S  R  W
Sbjct: 61  TFTVLFIFSWQLISILANLPLAFYHIYTYAKRPVMSGPGIYDPTTILNRSTLSSTLRISW 120

Query: 451 IXLAXXLLS 477
           I LA  L+S
Sbjct: 121 IKLAFYLVS 129


>AC006812-2|AAK39349.1|   56|Caenorhabditis elegans Hypothetical
           protein Y64H9A.1 protein.
          Length = 56

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = +1

Query: 370 VMSXPGLYDPTSIXNAHVLTSCQRXXWIXLAXXLLS 477
           +M  PG+YDPT+I N   L+S  R  WI LA  L+S
Sbjct: 1   MMPGPGIYDPTTILNRSTLSSTLRISWIKLAFYLVS 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,114
Number of Sequences: 27780
Number of extensions: 189880
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2720181880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)