Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_I01
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    27   2.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   8.7  

>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 491 WXPXCLXWXNTSKXXVFLHVNPXTTEA 571
           + P CL W  +    +FLH  P   EA
Sbjct: 100 YLPICLVWWYSKPILIFLHQTPELAEA 126


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/65 (27%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
 Frame = +1

Query: 616 SXPTXXTXFSPPCXXNXXTRSXTSSTXTXXPPNIQTXHXXXPPXXKPP---XKMSXQXXX 786
           S P   T   PP        S TS+      PN    H   P    PP      +     
Sbjct: 99  SKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSVPPSASVSRANSTAT 158

Query: 787 XTPHK 801
            TPHK
Sbjct: 159 TTPHK 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,001
Number of Sequences: 5004
Number of extensions: 21404
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)