Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_I01
         (934 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    32   0.51 
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    31   0.89 

>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 622 PTXXTXFSPPCXXNXXTRSXTSSTXTXXPPNIQTXHXXXPPXXKPP 759
           P   T   PPC     T + T++T T  PP + T     PP  +PP
Sbjct: 201 PAVQTTPQPPCTPRTTTTTTTTTTTTTLPPCVYT---PAPPATQPP 243


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 622 PTXXTXFSPPCXXNXXTRSXTSSTXTXXPPNIQTXHXXXPPXXKPP 759
           P   T   PPC     T + T++T T  PP + T     PP   PP
Sbjct: 278 PAAQTTPQPPCTPRTTTTTTTTTTTTALPPCVYT---PAPPATAPP 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,342,261
Number of Sequences: 27780
Number of extensions: 135201
Number of successful extensions: 257
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)