Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_H19
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   4.5  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.9  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 4.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 795 PPPPPPXXY 821
           PPPPPP  Y
Sbjct: 24  PPPPPPPGY 32



 Score = 21.8 bits (44), Expect(2) = 4.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 777 PXXXXXPPPPPP 812
           P     PPPPPP
Sbjct: 5   PPGNPPPPPPPP 16


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 323 ETTRVEGIRY-SDTDIAAVPRXXXXXXXXXVDEPARLS**RPRLEGAVRGGRG 478
           ++ R++G  Y + +DI +  +            P RL    PR  G  RGGRG
Sbjct: 402 QSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGSRGGRG 454


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 528 GRYRTQASSISELRGEWPRPPRTAPSSRG 442
           G   T  + IS L+ +   PP TAP S G
Sbjct: 52  GASNTSTNQISSLKVDVSSPPSTAPGSAG 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,181
Number of Sequences: 5004
Number of extensions: 40905
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)