Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_H19
         (965 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976     56   6e-08
12_02_0747 - 22743259-22743268,22743686-22743773,22744334-227443...    54   2e-07
12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337     51   2e-06
04_03_1000 + 21604164-21605387,21605467-21605817                       44   2e-04
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225...    30   3.2  
01_05_0250 - 19907517-19908429,19910000-19910268                       30   3.2  
01_05_0194 - 19107143-19108055,19110864-19111132                       29   5.5  
11_06_0184 - 21006659-21009823                                         29   7.3  
08_01_1063 + 10839860-10840099,10840185-10840895                       28   9.7  

>11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976
          Length = 211

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 25/69 (36%), Positives = 40/69 (57%)
 Frame = +3

Query: 429 SASNVRGWRALYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYYAFNAC 608
           S + V   R  +V   AT  GA +W+T + GIV++  LPRH+FG +Q  +FP Y+   + 
Sbjct: 32  SGAGVAAARLAHVLCFATAWGAALWVTFIGGIVMFKYLPRHQFGSLQGKMFPAYFMLISV 91

Query: 609 MSLLGLLAY 635
            S + + A+
Sbjct: 92  CSAISVAAF 100


>12_02_0747 -
           22743259-22743268,22743686-22743773,22744334-22744395,
           22744728-22744915,22746276-22746495,22746647-22746855
          Length = 258

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
 Frame = +3

Query: 477 ATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYY-AFNACMSL-LGLLAYL 638
           AT  GA +W T + GI+++ +LPRH+FG +Q  LFP Y+   +AC ++ +   AYL
Sbjct: 51  ATSWGAALWATFIGGIIMFKNLPRHQFGNLQGKLFPAYFMLISACAAVSVAAFAYL 106


>12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337
          Length = 200

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 20/61 (32%), Positives = 36/61 (59%)
 Frame = +3

Query: 453 RALYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYYAFNACMSLLGLLA 632
           +A+++   AT  G  +W  LV G++++ +LPRH  GR++  +FP  +A NA  +     A
Sbjct: 27  KAVHLLCFATSWGVTVWAILVGGVIMFLNLPRHAMGRLRGKVFPACFALNAACTAASAAA 86

Query: 633 Y 635
           +
Sbjct: 87  F 87


>04_03_1000 + 21604164-21605387,21605467-21605817
          Length = 524

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 23/54 (42%), Positives = 31/54 (57%)
 Frame = +3

Query: 477 ATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYYAFNACMSLLGLLAYL 638
           A   GA +W+T VS  VL  +LPR +   VQ+ LFP+Y+   A    L L A+L
Sbjct: 318 AAAYGASLWVTFVSSYVLAAALPRQQLAMVQSKLFPMYFRAVAYGVGLALAAHL 371


>06_01_0313 -
           2250312-2250516,2250585-2250610,2250792-2251076,
           2251289-2251567,2251817-2252121,2252581-2252860,
           2253209-2253475
          Length = 548

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +2

Query: 452 EGAVRGGRGHSPRSSDMD---DACVRYRPILLPSETRVRP-RADHPVPYLLRVQRLHEL 616
           EG V G   H  +   +D   D  +++RPI+LP   R  P RA     ++  V+R +EL
Sbjct: 447 EGTVGGFGSHVSQFISLDGLLDGKIKWRPIVLPDSNRTDPFRATPRRTFVDEVRRKNEL 505


>01_05_0250 - 19907517-19908429,19910000-19910268
          Length = 393

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 23/68 (33%), Positives = 29/68 (42%)
 Frame = +2

Query: 455 GAVRGGRGHSPRSSDMDDACVRYRPILLPSETRVRPRADHPVPYLLRVQRLHELAGTPGV 634
           G  RGG GH+P +          + + L  E+  + RAD     LLRVQ L  LA   G 
Sbjct: 2   GKKRGGHGHAPAAPPR----AGNQAVSLREESSGKTRAD--AASLLRVQHLQRLAAWAGG 55

Query: 635 PPHTVPYG 658
                P G
Sbjct: 56  EARVGPLG 63


>01_05_0194 - 19107143-19108055,19110864-19111132
          Length = 393

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 23/68 (33%), Positives = 29/68 (42%)
 Frame = +2

Query: 455 GAVRGGRGHSPRSSDMDDACVRYRPILLPSETRVRPRADHPVPYLLRVQRLHELAGTPGV 634
           G  RGG GH+P +          + + L  E+  + RAD     LLRVQ L  LA   G 
Sbjct: 2   GKKRGGHGHAPAAPPR----AGNQAVSLREESSGKTRAD--AASLLRVQHLQRLAAWAGG 55

Query: 635 PPHTVPYG 658
                P G
Sbjct: 56  EAGAGPLG 63


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 430 QLVTSAAGGRCTWGPWPLTSELR 498
           +L T + GG C W PW + +  R
Sbjct: 79  ELYTQSGGGHCGWQPWTMVARHR 101


>08_01_1063 + 10839860-10840099,10840185-10840895
          Length = 316

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 599 ERVVDREQDGLHAAELVSRKGE 534
           ER V+R+ +G H   LVS KGE
Sbjct: 124 ERSVNRKDEGFHVVTLVSPKGE 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,019,291
Number of Sequences: 37544
Number of extensions: 368564
Number of successful extensions: 3280
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2915
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)