Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_H17
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0127 + 12140843-12140966,12141170-12141567                       31   1.6  
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385...    29   4.8  
01_01_1143 - 9064210-9065682                                           28   8.4  

>06_02_0127 + 12140843-12140966,12141170-12141567
          Length = 173

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/74 (27%), Positives = 26/74 (35%)
 Frame = -3

Query: 684 GGXFGVFXGGGXXGKNPPXGXFXGFGXFWGXLXKNFFXGXPXXXGXXXXPPXGXXKXXXP 505
           GG  G + GGG  G     G + G+G + G     +  G     G       G       
Sbjct: 98  GGYGGGYGGGGGGGGGGGYGGYGGYGGYGGGGYGGYNKGYGGGGGGGYSKGFGGGYGGG- 156

Query: 504 PXXPGAGXFXGGXG 463
              PG G + GG G
Sbjct: 157 -GYPGGGYYGGGGG 169


>10_08_0614 -
           19238064-19238132,19238381-19238407,19238436-19238510,
           19238637-19239317,19239423-19239554,19239676-19239723,
           19239828-19239878,19240015-19240134,19241121-19241261,
           19241701-19241865,19241981-19242160,19242314-19242445,
           19242536-19242643,19242779-19242883,19243217-19243321,
           19243407-19243463,19243991-19244010,19244299-19244377,
           19245021-19245080,19245562-19245615,19246535-19246600,
           19246938-19246990,19247361-19247450,19248152-19248249,
           19248348-19248721
          Length = 1029

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +1

Query: 370 FXGXGGGXXGFXXXKKPPXPXXXGXXFLGPXPXPPXKXPGP 492
           F G GGG  G      P          +GP P PP   P P
Sbjct: 58  FFGGGGGSGGGSRSTTPGRRGSSSSSLVGPVPSPPSPVPFP 98


>01_01_1143 - 9064210-9065682
          Length = 490

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 708 GVXPLXXXGGXFGVFXGGGXXGKNPPXG 625
           G+  +   GG  G + GGG  G  PP G
Sbjct: 455 GLPGMPGAGGYLGGYGGGGGYGSTPPGG 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,684
Number of Sequences: 37544
Number of extensions: 180938
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)