Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_H11
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.67 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.89 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 20/87 (22%), Positives = 22/87 (25%)
 Frame = +3

Query: 453 PRAGKXPXPXGXXXPGXGXPFPFPRXXXGGPGXSXPXXGNTPPXGGKGXXPXKRGXPXKX 632
           P A   P P     P    P P P      P  + P     PP       P +   P K 
Sbjct: 125 PSAPAPPTPQSELRPPTSAP-PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183

Query: 633 XXPKXPXKXPXPXKXPNXRPXPXGPPP 713
                      P   P   P P    P
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAP 210


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 18/63 (28%), Positives = 22/63 (34%)
 Frame = +3

Query: 537  GGPGXSXPXXGNTPPXGGKGXXPXKRGXPXKXXXPKXPXKXPXPXKXPNXRPXPXGPPPP 716
            GG   + P   +TPP   +   P +   P     P  P   P P   P     P   PPP
Sbjct: 1679 GGMAPAHPV--STPPVRPQSAAPPQMSAPTP---PPPPMSVPPPPSAPPMPAGPPSAPPP 1733

Query: 717  GXP 725
              P
Sbjct: 1734 PLP 1736


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/63 (26%), Positives = 18/63 (28%)
 Frame = -3

Query: 595  PFPPXGGVXPXXGXEXPGPPXXXRGKGKGXPXPGXXXPXGXGXXPARGXPPXPPPXPXXF 416
            P P   G  P        PP          P P    P      P+ G PP P P     
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA--PSSGIPPVPKPAAGVP 1189

Query: 415  PXP 407
            P P
Sbjct: 1190 PVP 1192


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 648 PXKXPXPXKXPNXRPXPXGPPPPGXP 725
           P   P P   P   P   GPPPP  P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.149    0.500 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,484
Number of Sequences: 5004
Number of extensions: 24048
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)