Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_H09
         (1102 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    30   2.5  
Z81549-10|CAI79203.1|  128|Caenorhabditis elegans Hypothetical p...    29   4.5  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   7.8  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   7.8  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    29   7.8  

>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -1

Query: 631 GPXPAPXPXPAXXXGXXVXGXGXRXCPXPXPSPPXPLG 518
           GP PA  P PA   G    G G    P   P PP P G
Sbjct: 185 GPGPAGPPGPAGADGNTPSGGGEG--PAGPPGPPGPAG 220


>Z81549-10|CAI79203.1|  128|Caenorhabditis elegans Hypothetical
           protein F55C9.12 protein.
          Length = 128

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 581 GGWXXXXXXPXPXPQPPPPP 522
           G W      P P P PPPPP
Sbjct: 19  GRWKRSADVPLPSPSPPPPP 38


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 581 GGWXXXXXXPXPXPQPPPPP 522
           GG+      P P P PPPPP
Sbjct: 293 GGYSAPAAAPPPPPPPPPPP 312


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 581 GGWXXXXXXPXPXPQPPPPP 522
           GG+      P P P PPPPP
Sbjct: 293 GGYSAPAAAPPPPPPPPPPP 312


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -1

Query: 628 PXPAPXPXPAXXXGXXVXGXGXRXCPXPXPSPPXP 524
           P PAP P PA      V          P P+PP P
Sbjct: 349 PEPAPTPAPAPAEDPVVTPAPEELTTPPPPAPPPP 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.137    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,085,566
Number of Sequences: 27780
Number of extensions: 173122
Number of successful extensions: 1158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2971275592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)