Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_H05
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defecti...    29   4.4  
U42832-2|AAA83572.1|  558|Caenorhabditis elegans Udp-glucuronosy...    29   5.9  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    28   7.8  

>U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defective
           protein 9, isoformc protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 179 KPAPERRRRIGSLRNSL*VYVNSNADVKAQAA 84
           KPAPE+     SL N L V  N+  ++KAQ A
Sbjct: 407 KPAPEQPVNASSLHNELRVISNAICELKAQQA 438


>U42832-2|AAA83572.1|  558|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein57 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 65  HQVISTAP-LVP*RPRLNLHKLTMNFAKILSFVFALVLALSMTSAAPEPRWK 217
           H VIS  P L+P  PRL   KL +   K++  V    L   +  A P   W+
Sbjct: 46  HNVISIKPVLIPEEPRLVKPKLHLVREKVIKNVLNKDLFKPLEDAVPNAAWR 97


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 384 YILKLTSRLNNTSIYGSRFKDHFPIALAEPRTSIAGPALTMP 259
           ++L L+  L   S Y    K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,055,478
Number of Sequences: 27780
Number of extensions: 181404
Number of successful extensions: 405
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)