Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_H03
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    26   6.5  

>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 256 TTEVLRGIEMSFRNQLGLRQSSVYPLSQAYLIINFH 149
           T E    +++S RN++ L+QSS+  + ++Y   NFH
Sbjct: 23  TLEAELKLKLSHRNKIPLKQSSIEEIKESY---NFH 55


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 105 ILNTIKQTYNLELHVIFVSKXLKECPSSXXVXE 7
           +LN   Q++NL+ H+ +++K L   PS   V +
Sbjct: 21  LLNGESQSFNLQKHLKYLTKMLDPLPSPFTVLD 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,431
Number of Sequences: 5004
Number of extensions: 38390
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)