Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_G23
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   8.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   8.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   9.4  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 163 EDEG*DLCEIHCKFM*IQTRTLRHKRRCTDHLMCTIKNVKILRIPY 26
           E +G +   +H + + I+T TL  K   T+ L+C    +K    PY
Sbjct: 656 EQDGWEFIPVHGQQVGIRTSTLEDKCTATEMLVCYAAELKADFDPY 701


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 511 KYFIDFQFYNITFITKKTLADINFKLYLKLNVLL 410
           K FI+F F+NIT  +K T       L + L + L
Sbjct: 706 KDFIEFLFHNITVSSKHTAVIFTSDLLMVLKIAL 739


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 9.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 803 NXPPPPPXP 777
           N PPPPP P
Sbjct: 188 NPPPPPPPP 196



 Score = 21.0 bits (42), Expect(2) = 9.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 797 PPPPPXPXTXNE 762
           PPPPP P   ++
Sbjct: 191 PPPPPPPAVEDQ 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,619
Number of Sequences: 5004
Number of extensions: 37185
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)