Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_G19
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    29   0.85 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   3.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   3.4  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   4.5  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    26   6.0  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   7.9  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   7.9  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 374 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 502
           AK  G   ++ VGG ++ E  EK + ++++  A  A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 477 LLSLIPECCWLNNMVSMELTSP 542
           L +L+PE  W NNM   EL +P
Sbjct: 227 LQALLPEVAWKNNMNQWELLNP 248


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +2

Query: 218  LPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTV 397
            +P+  D      T L  GY  +  D   L  L+ +L I R HD Y  +  +   Y  +  
Sbjct: 1125 MPVPNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNHDPYLMLNLILKHYLSMIY 1184

Query: 398  L 400
            L
Sbjct: 1185 L 1185


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 272 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 156
           S+   GC +TE+    T+ C  E     SCC S K  CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 540 ARSIPSKPYC--SANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTDNNTVRPG 382
           A S PS P    S +STP +  ++ +   +    Y   +SVS+ PP  ++ V PG
Sbjct: 277 ATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAY--SASVSSQPPLTHSYVHPG 329


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 721 LHLRLVDKGLFQFTNKGSETFTVLRFLLIDWRGAECLLNSMP 596
           +H+  +   LFQ T K  +  + L F L +  G EC+L   P
Sbjct: 271 IHVSTLVTPLFQVTEKIGKNTSDLWFALCEIDGLECVLKYRP 312


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 332 DRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSG 496
           D+  D+  + TS       + +   +GG   TEE + YN+ +E  +A T +IN G
Sbjct: 320 DKFVDSLNSWTSELTHCKNIILTPHIGGS--TEEAQ-YNIGIEVSEALTRYINEG 371


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 513 CSANSTPELMKAVRACCDSSRRLYFSGS 430
           C  NST + M  V  C D   RLY  G+
Sbjct: 652 CEFNSTRKRMSIVFRCPDGKIRLYVKGA 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,914
Number of Sequences: 5004
Number of extensions: 67143
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)