Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_G18
         (1207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.045
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.079
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   6.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.045
 Identities = 29/103 (28%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
 Frame = +2

Query: 584 RARPAXXXXXRAHXSXLPP-PXTPAPXXXTPPXXA*XTPXXLXXGXXXIXXSPLXTPRTX 760
           R+ PA      A  +  PP P  P+     PP      P  L  G      +P   P   
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMG------APAAPPLPP 451

Query: 761 QXXIAPAPXPXPXXAXLXAPXXXAAPXDPPXAXPYXXPPLXAI 889
              IAP   P P       P   AAP  PP   P    P+ +I
Sbjct: 452 SAPIAP---PLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.1 bits (72), Expect = 0.079
 Identities = 40/171 (23%), Positives = 50/171 (29%), Gaps = 3/171 (1%)
 Frame = +2

Query: 638  PPXTPAPXXXTP--PXXA*XTPXXLXXGXXXIXXSPLXTPRTXQXXIAPAPXPXPXXAXL 811
            PP  PAP    P  P  +   P     G   +    +  P   +  +A  P P P  A  
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGA-- 1120

Query: 812  XAPXXXAAPXDPPXAXPYXXPPLXAIXVXXRLTPKXXSGGXXXXXTPXHXPXPGAPXXXX 991
              P    +   PP   P   PP+    V     P   SG           P   AP    
Sbjct: 1121 -PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP-APSGAPPVPKPSVAAPPVPAPSSGI 1178

Query: 992  XPPXRXRGLXRRXXPPQGGKXGXQXPPRXRP-XXVXXHPXXRXXPPXPHXS 1141
             P  +         PP       + PP  +P   V   P     PP P  S
Sbjct: 1179 PPVPKPAAGVPPVPPPS------EAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 19/79 (24%), Positives = 22/79 (27%)
 Frame = +1

Query: 961  PXPRSPAXXTXPAXTXPGXQXKGXXPPGRXXGPSTXSXXXPXXXMXPPXXPXXAPXXPYX 1140
            P P +P     P  + P        PP     P   S   P     PP     AP     
Sbjct: 128  PAPPTPQSELRPPTSAP--PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185

Query: 1141 TXPPTXXAXPXXALXXXPP 1197
            + P    A P       PP
Sbjct: 186  SAPSLPSAVPPMPPKVPPP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,260
Number of Sequences: 5004
Number of extensions: 21480
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)