Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_G16
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    62   8e-11
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.89 
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   2.7  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   6.3  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 28/45 (62%), Positives = 36/45 (80%)
 Frame = -1

Query: 249 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQ 115
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L++
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVE 48



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -2

Query: 128 KNFSKQHYSDLASRPFXPGLVKYMSSGPVVXMVWE 24
           ++  ++HY++   +PF   LV +M+SGPV  M+WE
Sbjct: 44  RDLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWE 78


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 713 FWGRGAVKH*IGTLKGAPDL 654
           +WGR   +H +G L+G P+L
Sbjct: 227 YWGRAIARHFVGQLRGGPNL 246


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 118 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 291
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 164 KPFFSKRSIMVPTRPRCTPSGLT 232
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,542
Number of Sequences: 5004
Number of extensions: 62094
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)