Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_G16
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 70 2e-12
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 63 3e-10
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 62 6e-10
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 60 3e-09
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248... 31 1.6
01_05_0535 - 23001864-23005052 29 5.0
11_06_0271 - 21804629-21805836,21805997-21806015 29 6.6
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 28 8.7
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 70.1 bits (164), Expect = 2e-12
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = -1
Query: 261 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQ 115
A + ERTFI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q
Sbjct: 42 AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQ 90
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = -2
Query: 128 KNFSKQHYSDLASRPFXPGLVKYMSSGPVVXMVWE 24
K F+++HY DL RPF GL ++SSGPV+ MVWE
Sbjct: 86 KEFAQKHYHDLKDRPFFNGLCDFLSSGPVLAMVWE 120
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/37 (72%), Positives = 33/37 (89%)
Frame = -1
Query: 249 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFV 139
E++FIM+KPDGVQRGL+G II RFEKKGF L G+KF+
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFM 38
Score = 58.8 bits (136), Expect = 5e-09
Identities = 22/36 (61%), Positives = 32/36 (88%)
Frame = -2
Query: 131 QKNFSKQHYSDLASRPFXPGLVKYMSSGPVVXMVWE 24
+++F++QHY+DL+ +PF PGLV+Y+ SGPVV MVWE
Sbjct: 41 ERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWE 76
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 62.1 bits (144), Expect = 6e-10
Identities = 29/45 (64%), Positives = 35/45 (77%)
Frame = -1
Query: 249 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQ 115
E+++IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQ 47
Score = 53.6 bits (123), Expect = 2e-07
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = -2
Query: 128 KNFSKQHYSDLASRPFXPGLVKYMSSGPVVXMVWE 24
K+ +++HY DL +PF PGL++Y++SGPVV M WE
Sbjct: 43 KDLAQEHYKDLKEKPFFPGLIEYITSGPVVCMAWE 77
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 59.7 bits (138), Expect = 3e-09
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = -1
Query: 249 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFV 139
E+TFIM+KPDGVQRGL+G +I RFEKKGF L +K +
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLI 40
Score = 56.4 bits (130), Expect = 3e-08
Identities = 22/36 (61%), Positives = 32/36 (88%)
Frame = -2
Query: 131 QKNFSKQHYSDLASRPFXPGLVKYMSSGPVVXMVWE 24
+K+F+++HY+DL+S+PF GLV+Y+ SGPVV MVWE
Sbjct: 43 EKSFAEKHYADLSSKPFFGGLVEYIVSGPVVAMVWE 78
>04_04_1320 -
32623378-32623949,32624035-32624451,32624548-32624895,
32625671-32625768,32625882-32626051,32627134-32627418,
32628041-32628119,32628481-32628623,32629227-32629634
Length = 839
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 117 QATLQRFGIPAFLXWSSKVHEFRTCGP 37
QA L R GIPA+ WS +H GP
Sbjct: 76 QAALPRLGIPAYEWWSEALHGVSYVGP 102
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 68 LDQXRKA--GMPNRCSVAWRSSSDGHT-NFKPTSLKPFFSKRSIMVPTRPRCTPSGLTII 238
LD R+ GMP R +V+W GH + P P F M+ P C P+ T
Sbjct: 116 LDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLF---RAMLREGPGCRPTSFTFG 172
Query: 239 KVRSRC 256
V C
Sbjct: 173 SVLRAC 178
>11_06_0271 - 21804629-21805836,21805997-21806015
Length = 408
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 181 FRKERLQTSRFEIRMAIRRTSPSNTTAIWHPGL 83
FRK L S M I S T A+WHPG+
Sbjct: 172 FRKVVLSASPASDSMCIVAAISSRTLALWHPGM 204
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 375 GSLGTFHTLTDTHSTAKLPLIKHACRSTLEDHGHSC 482
GSLG+F T T + + + I+H+CR L+ C
Sbjct: 423 GSLGSFALATSTMAQSAIIRIEHSCRFLLQSKCLRC 458
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,780,261
Number of Sequences: 37544
Number of extensions: 463202
Number of successful extensions: 1046
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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