Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_G12
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    27   4.7  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    26   6.3  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   8.3  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   8.3  

>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 293 YFSCFSWSS-WPLIFCEFSYIRAI*KCSHIACTHLFITKLILCRFNIVISHFN 138
           + SC ++ S W L    F ++R   + S + C  L + K I   F+I I H +
Sbjct: 17  FLSCCAFMSHWKLKDFSFRFLRMCGERSLVVCYPLKLLKQIRSLFSIAIGHLS 69


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 267 GRPRKTGKIQSSREKDSIKLSRSDIQRIKNMLNESRPVMLTLMDPNRTN 413
           G+   T K QS  EKD+ K++ +  + +K   +      L L+D N  N
Sbjct: 24  GKRFVTEKSQSQEEKDTSKITENAKEEVKRDTSSLAKESLKLLDLNGLN 72


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 291 IQSSREKDSIKLSRSDIQRIKNMLNESRP-VMLTLMDPNRTNLHPQNIYPLNGSLSE 458
           I+S     ++     D+  +++M  +S+  ++L   DP+ T++HP  I   + SL E
Sbjct: 42  IESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVE 98


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 212 HIACTHLFITKLILCRFNIVISHFNCVSKKCIDN 111
           +IA   L ++ L LC   ++++    + +KC+DN
Sbjct: 537 NIAIPWLRLSGLALCHDPVIVTKLCRIGQKCVDN 570


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 724  ADHLGTRRRRASGLCCYKSSFVYPWNVTQTSS 629
            +D + T    A   CC K   +YPWN    S+
Sbjct: 1488 SDIVSTLSNYACPDCCSKEGKLYPWNTRPRST 1519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,769
Number of Sequences: 5004
Number of extensions: 69466
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)