Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_G07
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 33 0.22
06_01_0931 + 7192519-7194075 33 0.29
05_01_0499 - 4166891-4166942,4167191-4167510 31 1.2
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 31 1.6
02_04_0470 - 23183925-23184743,23184929-23185153 30 2.1
02_02_0272 - 8452994-8453187,8453850-8454975 29 6.3
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 8.3
11_01_0458 + 3536162-3537794,3537905-3538272 28 8.3
07_03_0723 + 20954827-20954905,20954974-20956277 28 8.3
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 28 8.3
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -2
Query: 383 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 267
G P R+SP L+ PAEAALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>06_01_0931 + 7192519-7194075
Length = 518
Score = 33.1 bits (72), Expect = 0.29
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = -2
Query: 620 LPPAE*SFRLMTSECAALSDAPTFCLNM*SSPPPSVLKLGALGMALGEFLIANALALRSW 441
+PP + R CAAL+ +P SS PPS A ++ +ALR+
Sbjct: 50 VPPGQTFERACIQACAALAFSPPAVAADLSSLPPS---------ASSPLVLVPNVALRTA 100
Query: 440 LLLW-NKLTLPATPSCSPKPGMRVPVRLSPCP 348
+L W ++L+LP SP V RL P P
Sbjct: 101 ILNWCDRLSLPYPAPLSPDTARDVVRRLMPSP 132
>05_01_0499 - 4166891-4166942,4167191-4167510
Length = 123
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -2
Query: 473 LIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAA 312
LI LALR LL N + PS SP+ + R P P + + ASP+ +A
Sbjct: 5 LIIVPLALRGASLLGNAVAAAVVPSSSPEQQQQQQRRPRPPPGSKNGASPSSSA 58
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 283 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGVAGKVNL 426
A N+R + S AS +A + + HG+ + G P +G AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 30.3 bits (65), Expect = 2.1
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Frame = -2
Query: 404 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAAL-----SLWRSLKSADPMALSTFLSLPVR 240
PS +PGMRV R SP +RA P +L S W P A ST S R
Sbjct: 159 PSLPAQPGMRVAHRWSPAK---ARALPPPPSLRYPSRSSWDGADLDGPTAASTTTSRRRR 215
Query: 239 GTFR-AAPEVPSEFTVKLPACLRARVATCLPLA 144
R P S + + C RA +A L A
Sbjct: 216 RHHRLVPPPAASPLSNRQRHCCRAAIAGALESA 248
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 368 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 237
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 371 PVRLSPCPFTLSRASPAEAA 312
P+RLSP P ++SR P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
>11_01_0458 + 3536162-3537794,3537905-3538272
Length = 666
Score = 28.3 bits (60), Expect = 8.3
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +1
Query: 376 RIPGFGEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGLDYMF---K 546
+IP G QL + N+ +NN H + AI + PS I ++N L G L K
Sbjct: 106 QIPSLGNQLQMLQIFNVLYNNLHGVIPN--AIFSLPSLIQVDLSYNNLHGQLPIDIGNAK 163
Query: 547 QKVGASLSA--AHSDVIN 594
Q V LS+ D++N
Sbjct: 164 QLVSLKLSSNKLSGDILN 181
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 398 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 297
CSP P R+P+R + C +ASP + + WR
Sbjct: 62 CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -2
Query: 425 KLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKS 285
K + P+ + P P ++P P + +PA A+ WR+ K+
Sbjct: 59 KTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKA 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,629,237
Number of Sequences: 37544
Number of extensions: 388473
Number of successful extensions: 1265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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