Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_G06
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   120   3e-28
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.17 
SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.6  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    28   2.1  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   8.5  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   8.5  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  120 bits (289), Expect = 3e-28
 Identities = 57/108 (52%), Positives = 66/108 (61%)
 Frame = +2

Query: 269 GFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQ 448
           GFH+H+ GD + GC S G HFNPE K HG      RHVGDLGN+  D     +    D  
Sbjct: 45  GFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSV 104

Query: 449 ISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGNAGGRVACGVIGI 592
           ISL G + IIGR +V+H   DD GK    +S KTGNAG R ACGVIGI
Sbjct: 105 ISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 362  NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIG 481
            ND   H GDLG ++ D N        DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


>SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 78

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 306 PPLRSP--FSCT*KPYSPGGSPVIPXLNVDLPILNLGERD 193
           PPLR P  F    +P+S GG+  +  LN+  P+   G +D
Sbjct: 37  PPLRGPAGFPVNPRPFSHGGNANLDRLNLKEPVDLEGPKD 76


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 560 GGRVACGVIGIL*IYKFHIYLSYLIKYIY 646
           GG++ C +IG++ I  F  ++SYL  Y +
Sbjct: 197 GGKLLCWIIGVIFIAAFIAHVSYLSFYSF 225


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 130 HGFTTPSRAIAVLST 174
           HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 377 HVGDLGNVVFDENHYSRIDLVDDQI 451
           HV + GNV FD    S + L+D ++
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,392
Number of Sequences: 5004
Number of extensions: 54803
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)