Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_G02
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 292 5e-80
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 292 5e-80
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 292 5e-80
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 68 2e-12
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.35
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.4
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 7.5
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 292 bits (716), Expect = 5e-80
Identities = 127/181 (70%), Positives = 153/181 (84%)
Frame = +2
Query: 254 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 433
RGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+
Sbjct: 53 RGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTII 112
Query: 434 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 613
N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGG
Sbjct: 113 SNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGG 172
Query: 614 RIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGS 793
RIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G
Sbjct: 173 RIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQ 232
Query: 794 Q 796
+
Sbjct: 233 K 233
Score = 69.3 bits (162), Expect = 6e-13
Identities = 31/47 (65%), Positives = 40/47 (85%)
Frame = +1
Query: 112 AQRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPG 252
AQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPG
Sbjct: 7 AQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPG 52
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 792 RKVGLIAARRTG 827
+KVGLIAARRTG
Sbjct: 232 QKVGLIAARRTG 243
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 292 bits (716), Expect = 5e-80
Identities = 127/181 (70%), Positives = 153/181 (84%)
Frame = +2
Query: 254 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 433
RGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+
Sbjct: 53 RGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTII 112
Query: 434 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 613
N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGG
Sbjct: 113 SNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGG 172
Query: 614 RIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGS 793
RIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G
Sbjct: 173 RIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQ 232
Query: 794 Q 796
+
Sbjct: 233 K 233
Score = 69.3 bits (162), Expect = 6e-13
Identities = 31/47 (65%), Positives = 40/47 (85%)
Frame = +1
Query: 112 AQRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPG 252
AQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPG
Sbjct: 7 AQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPG 52
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 792 RKVGLIAARRTG 827
+KVGLIAARRTG
Sbjct: 232 QKVGLIAARRTG 243
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 292 bits (716), Expect = 5e-80
Identities = 127/181 (70%), Positives = 153/181 (84%)
Frame = +2
Query: 254 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 433
RGAPLA V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+
Sbjct: 53 RGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTII 112
Query: 434 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 613
N+EEK GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGG
Sbjct: 113 SNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGG 172
Query: 614 RIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGS 793
RIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G
Sbjct: 173 RIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQ 232
Query: 794 Q 796
+
Sbjct: 233 K 233
Score = 69.3 bits (162), Expect = 6e-13
Identities = 31/47 (65%), Positives = 40/47 (85%)
Frame = +1
Query: 112 AQRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPG 252
AQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPG
Sbjct: 7 AQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPG 52
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 792 RKVGLIAARRTG 827
+KVGLIAARRTG
Sbjct: 232 QKVGLIAARRTG 243
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 67.7 bits (158), Expect = 2e-12
Identities = 41/125 (32%), Positives = 69/125 (55%)
Frame = +2
Query: 380 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 559
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 560 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGN 739
+ + ++ +G+V+ + + KAGR+ ++ R P VRG AMNP +HPHGGG
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGG 274
Query: 740 HQHIG 754
+ IG
Sbjct: 275 GKSIG 279
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 606 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 436
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 617 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 709
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 465 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 367
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,472,158
Number of Sequences: 5004
Number of extensions: 75135
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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