Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP26_F_G02
(827 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 297 5e-81
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 37 0.020
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical pr... 28 9.4
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 28 9.4
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 28 9.4
U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical p... 28 9.4
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 297 bits (730), Expect = 5e-81
Identities = 126/181 (69%), Positives = 154/181 (85%)
Frame = +2
Query: 254 RGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIV 433
RGAPLA++ FRDPYK+KT K +A EG++TGQF++CG KA +++GN++PVG +PEGT +
Sbjct: 54 RGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTI 113
Query: 434 CNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGG 613
CN+E K GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGG
Sbjct: 114 CNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGG 173
Query: 614 RIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGS 793
R DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG STV+R SAG
Sbjct: 174 RTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGK 233
Query: 794 Q 796
+
Sbjct: 234 K 234
Score = 83.4 bits (197), Expect = 2e-16
Identities = 37/46 (80%), Positives = 39/46 (84%)
Frame = +1
Query: 115 QRKGAGSVFVSHTKKRKGAPKLRSLXYAERHGYIKGVVKDIIHDPG 252
QRKGAG +F SH K RKGA KLR L YAERHGYIKG+VKDIIHDPG
Sbjct: 8 QRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPG 53
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 36.7 bits (81), Expect = 0.020
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2
Query: 389 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 565
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP +
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLPHKHEFS 217
Query: 566 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVK 670
L + VG ++ ID I + + + ++ K
Sbjct: 218 LHRTCMATVGRLSHAD-IDGKIFGSAQMHRRFGYK 251
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 503 IGHNPDAKRTRVKLPSGAKKVL 568
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical
protein T05F1.8 protein.
Length = 393
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -3
Query: 669 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 550
LT W+ +FK+ +++ RPPP +P L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPQMPESLKKKLGIPGTTEVAP 352
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/76 (28%), Positives = 27/76 (35%)
Frame = -1
Query: 662 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 483
C+C Q CQ +QQQ C C A+P QTV + C QS + Q
Sbjct: 37 CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93
Query: 482 RHVPDDLYHPFSLQDC 435
P Q C
Sbjct: 94 SAPAVSQCQPMCQQQC 109
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/76 (28%), Positives = 27/76 (35%)
Frame = -1
Query: 662 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 483
C+C Q CQ +QQQ C C A+P QTV + C QS + Q
Sbjct: 37 CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93
Query: 482 RHVPDDLYHPFSLQDC 435
P Q C
Sbjct: 94 SAPAVSQCQPMCQQQC 109
>U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical
protein C33F10.12 protein.
Length = 392
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -3
Query: 669 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 550
LT W+ +FK+ +++ RPPP +P L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPRMPESLKKKLGIPGTTEVAP 352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,637,339
Number of Sequences: 27780
Number of extensions: 446746
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -