Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_F24
         (937 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0883 - 23982022-23982825                                         33   0.25 
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142     29   7.0  
12_02_0454 + 19199063-19200757,19202201-19202287                       28   9.3  

>12_02_0883 - 23982022-23982825
          Length = 267

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = -2

Query: 216 HAPAATKMAADGCRPTRKRNGTXSDLAQNGTGXVPERQPQQTRHHKKHDDLXNAKKV 46
           H P   + A +   P +      SD AQ GT   PE  P+ T    K D   NA  +
Sbjct: 58  HVPRRKRTARNQPLPEQHLKKPASDYAQGGTSDAPETPPKPTTSEVKVDSAVNAPDI 114


>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
          Length = 407

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +2

Query: 11  PLPASTSRAFLXTFLALXKSSCFLWCRVCCGCRSGTXPVPF---CARSDXVPLRFRVGLH 181
           P PA   R+ L  FL+     C L   +C        P+PF     R    P+ + +G  
Sbjct: 72  PSPAILPRSLLADFLSAAAFFCALLLLLCLSLPRLPFPLPFPLPLRRPRRSPILWSIGSS 131

Query: 182 PSAA 193
           PSA+
Sbjct: 132 PSAS 135


>12_02_0454 + 19199063-19200757,19202201-19202287
          Length = 593

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 177 RPTRKRNGTXSDLAQNGTGXVPERQPQQTRHH 82
           R   K+ GT +D   NG G   E QP+++RH+
Sbjct: 475 RRAAKKGGTYAD---NGQGRKSENQPEESRHN 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,746,703
Number of Sequences: 37544
Number of extensions: 201197
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)