Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_F23
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    28   1.6  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    28   1.6  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    28   2.1  

>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 549 EKNNSVHSFGFSF*GVSRIAEGRSHIHTSLV*YQPVSQ 436
           E NNS+H+F F    V    +GR  +H   +   PVSQ
Sbjct: 52  ELNNSLHNFDFKIKRVQDQLDGRLTLHFQNLSGDPVSQ 89


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 81  SQQTSDDNLLLEKNYKLIASQSEKRLINFD 170
           S+ T+DDNL+  K  ++I S  E   +N D
Sbjct: 591 SEPTADDNLIPNKEAEIIQSSDEFESVNID 620


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 848 PQTFPKTFWQYESVPND*SYTVINAKDLLFP 756
           P + P  FW+Y +VPN   +  + + D + P
Sbjct: 433 PTSSPAPFWKYVAVPNPHDWPQVGSYDTISP 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,456,003
Number of Sequences: 5004
Number of extensions: 71658
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)