Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_F23
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462...    29   3.8  
07_03_1016 - 23313210-23313827,23314649-23314717                       29   5.0  
10_05_0098 + 9148424-9148682,9148817-9148905                           28   8.7  

>02_05_0410 +
           28744716-28744841,28745361-28745965,28746151-28746270,
           28746597-28746737,28748626-28749370
          Length = 578

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 741 WPSIRDERALPVRSQHSIRS*TNIPSSHMTVMEWSHSGHSLYTSRFHNSYVI 586
           WP+ R+  A   RS H+  S +N  SS  +    ++S HS Y    H   ++
Sbjct: 370 WPTQRNALAGSTRSHHAKNSSSNSSSSGASSASKNNSSHSGYHHHHHQKPLV 421


>07_03_1016 - 23313210-23313827,23314649-23314717
          Length = 228

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 806 PND*SYTVINAKDLLFPIVS*SGPVYEMNAH 714
           P D  +T ++  D L PI+S +GP Y +  H
Sbjct: 50  PGDKCWTAVDLSDHLRPIMSFAGPFYAVTTH 80


>10_05_0098 + 9148424-9148682,9148817-9148905
          Length = 115

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 254 ERWREYGDGFLVLK-FTSCHHSFSFEYTYEKP 346
           ERWR+   G +V + F SCH    +EY +  P
Sbjct: 52  ERWRQDAAGNVVCRRFWSCHGCLCYEYDHIVP 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,519,941
Number of Sequences: 37544
Number of extensions: 395210
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)