Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP26_F_F11
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    34   0.025
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    34   0.033
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.53 
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   1.6  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   6.5  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    26   8.6  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 158 WWRALVSELLATAFLVWLGVSSVVPYKGKEAVVLSHPALAF--GFVVLGNAMAFGPTSGA 331
           ++R   +E L T  LV  GV S +          S  +L+F  GF  +      G  SG 
Sbjct: 309 FFREGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGISGG 368

Query: 332 HMNPAVTLAAAL 367
           H+NPAVT++ A+
Sbjct: 369 HVNPAVTISLAI 380


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = -3

Query: 363 AAASVTAGFMCAPDVGPNAIALPSTTNPK-AKAGCDSTTASFPLYGTTELTPSHTRNAVA 187
           A++S+T+  + +  +  +++A  STT+   A +  +STT++ P    T  + S T  A +
Sbjct: 130 ASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSST--AAS 187

Query: 186 SSSETSARHHRTAPSRTNLRGVSSSV 109
           +S+ +S+    +  S T+    SSS+
Sbjct: 188 NSATSSSLASSSLNSTTSATATSSSL 213


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 21/113 (18%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
 Frame = -3

Query: 384 GDMRPCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSH 205
           G ++   +++SV++    +    P++ +  +TT+P + +   S+++S     ++  + S 
Sbjct: 121 GVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180

Query: 204 TRNAVASSSETSARHHRTAPSRTNLRGV---SSSVDGHVERARACRCGRSECR 55
           + ++ +SSS +S+    ++ S ++   V   SS+   H   + +     S  R
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSR 233



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = -3

Query: 312 NAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSETSARHHRTAPSRTN 133
           N +   + ++    +   S+++S P   +T  T S + ++ +SSS +S+    ++ S ++
Sbjct: 120 NGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSS 179

Query: 132 LRGVSSS 112
               SSS
Sbjct: 180 SSSSSSS 186



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/85 (21%), Positives = 48/85 (56%)
 Frame = -3

Query: 366 SAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVA 187
           S+++S ++    +     ++ +  S+++  + +   S+++S P+  T+  + SH+ ++ +
Sbjct: 167 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI--TSSTSSSHSSSSSS 224

Query: 186 SSSETSARHHRTAPSRTNLRGVSSS 112
           SSS +S+   R + S + +  +SSS
Sbjct: 225 SSSSSSS--SRPSSSSSFITTMSSS 247


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 312 NAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSETSAR 163
           N +   +T    A  G    T+S   YG+T  +  H RN++A S+    +
Sbjct: 513 NVVTTQTTHEEDALIGSSINTSSHQHYGSTLNSTPHRRNSIALSNRAHVK 562


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -3

Query: 297 PSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSS 178
           PS+++  A +   STT+S  L  +T LT S + +AV+S++
Sbjct: 110 PSSSSSSAASSTTSTTSSSSLVSSTTLT-SSSPSAVSSTT 148


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 134 FVRLGAVRWWRALVSEL--LATAFLVWLGVSSVVPYKGKEAVVLSHPALAFGFVVLG 298
           FV L A    +  + +L  L+ +F+V LGV+ +V Y G  + + S+P L    V++G
Sbjct: 114 FVALFATTLLKRTIGQLQWLSLSFVV-LGVA-IVGYSGSSSSIGSNPILGITAVLIG 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,348
Number of Sequences: 5004
Number of extensions: 39577
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)